MmuINT0103188 @ mm10
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67211329-67213451:+
Coord C1 exon
chr11:67211329-67211584
Coord A exon
chr11:67211585-67213208
Coord C2 exon
chr11:67213209-67213451
Length
1624 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TGTCTAATATCTCTTCATAGGAA
3' ss Score
9.69
Exon sequences
Seq C1 exon
AGAGTCCATCTTCTGCATCCAGTACAACGTCCGCGCCTTCATGAATGTGAAACACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAACCTCTCTTGAAGAGCGCAGAGACCGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAAAAAGCTAAAGAAAACCTTGCAAAGGCGGAGGCCAAAAGAAAAGAGCTGGAAGAAAAGATGGTAGCTCTGATGCAAGAGAAAAATGACCTGCAGCTCCAAGTTCAGTCT
Seq A exon
GTGAGTCTCAGAGTTCTCTCTGATGCTAAAATCTCAGCTCAGTGATGATTCCTCAGAATCAAGTGATGATCTAGCAATCGTTTAAATTGACTTCTTTGAGTGTTCTGTAACATTCCATACACAACAGTACTGCAAATCAGTTCAGGAGGAGTCTTAGTTGCCTGGATGGAAAAAATTCCAAACATTTCTCATTCTTTGAGTTGTTTTTCCTGGCAGACTATGGATGGGAAGTAGGGAGATCTTTGCTTTCGCACAATCCTACCTATTGACAAATGTCAAAAGAACAATATTATTAGTGAATAGGGAGAAGACCTTGTAATAAAAATAAAAATATATCAGCCTCACTTCAATATTCCAAATATTTGACCAATAATATTCTAAAAACTTTCTGTACAGTTTTGTTTTAGGAATTTTAGAATAACTAAAAGTATTGGATCAAGGCAAGGCTTTCTATAGATAGTGTCATTTTTTTTTAAATGCATGGCATGAGGGATTGGGTTGAAAATCTCACTCTGATGAACCAATAAATATTCAGAAACTTGGTAAATAATATGTGACAAGGGGCTACCATCTGATCTATTTTTGTTTCTCCCAAGCTACTGTCAAAACCAAGCATAGAAACATGAAAAGTTGCTCTTTAGTTTTCTGAATTCAGAAGAGGAAACAATCAGTCCCACTGGGTCTTTATTCTGAATACATAACAAAAAGAATTACTAACATCAAGGTTGGATTGTATCTTTACTGCAGTTTGTAGAGACTGAGGTTTTCCAAAATGAGAAGAATAAAGAGATTATTGAAGAAGAGGTCTAGGCTTGATCCAACTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCTTCTCCCTCTCTCCCTCTCTCTGTTTGTGTGTGAGCACATGCGTGAGTGCGTGCATGTGTGCGTGCGTGTGTGTATTAGCAGTATTTTATCTACTACCCACCTAGTAACTATCTCATGTGCTCTAGAGCCTAGAGATTCAAGCAAGTTGTCACAGATTTTATATTTCAAATCCTATTTCTTCATGAGAAATAAGGGTAATACTTACCTAAGTACTACCTGTCTCTATGACCCGTTCTCTTTGGTTCTTCCAGTCATTCTAAGCTGTTCTGTCATTTGAAGATGCTCTTTCCATTTAGGTCACTTTTTTCTGATGTTCACTGTCCTCTTAGCAAGGTCCTGATATTCAGTTCTTTATTTTAAGATCTTTTGTTGTATACCAAACTTAAATAAAAATAAACATTAAACAAAGAAAGCCAATTTGAAATTGTATGCTGATACATTAAACATATAGCAAAACAATGGTATCATAGTTTCACTGGGAACCATGTTTTACACTTCTTTGCTATCATTCAAGTTAACAGTCAGTGCCCTGACAATGTTTCTCAGTGGTAGAAAGCTAACTAAAAGAAACCTAATAATAGCTTTAAACATCATTTGCTTGCTTGCTTTAAAAATATTAATAAAATCTAAAAGGTCTAGGGAACTAAAATCTAAAAATGTCTAATATCTCTTCATAG
Seq C2 exon
GAAGCAGACAGCTTGGCCGATGCAGAGGAGCGATGCGACCAGCTGATCAAAACCAAAATCCAGCTGGAGGCCAAAATCAAAGAGGTGACCGAGAGGGCCGAGGATGAGGAGGAGATCAACGCAGAGCTCACGGCCAAGAAGAGGAAGCTGGAGGACGAGTGCTCAGAGCTGAAGAAGGACATCGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAGCACGCCACGGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328:ENSMUST00000124516:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.370
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.4=62.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(40.6=100),PF0157614=Myosin_tail_1=PU(29.2=49.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGAAACACTGGCCCTGG
R:
GTGAGCTCTGCGTTGATCTCC
Band lengths:
344-1968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types