GgaINT0127802 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:439510-440188:-
Coord C1 exon
chr18:439880-440188
Coord A exon
chr18:439726-439879
Coord C2 exon
chr18:439510-439725
Length
154 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTCTTATATCTCTGACTAGGAT
3' ss Score
9.32
Exon sequences
Seq C1 exon
GCCTCCCTGGAACATGAAGAGGGGAAGATCCTGCGCCTCCAACTGGAGCTCAACCAGGTCAAGTCTGAGATTGACAGGAAAATAGCAGAGAAAGATGAGGAAATTGACCAACTGAAGAGAAATCACCTCAGAATTGTGGAGTCCATGCAGAGCACTCTGGATGCTGAGATCAGGAGCAGGAATGAAGCCCTGCGGCTGAAGAAGAAGATGGAGGGAGACCTGAATGAAATGGAGATCCAGCTGAGCCATGCTAACCGTGTTGCTGCAGAGGCACAAAAGAATCTGAGAAACACACAAGGAGTGCTCAAG
Seq A exon
GTAAGACTGACCCAAAGATGTGCTCACCATTTTCTTATATTGCTAAAAATGTTCCTGTCTTCTATCAGTTCCACAGTGATGTGAAAATAGGAAATAAGAAAATAGGAAAAATGTGCCTCACAATTTCTCACCTCTGTCTTATATCTCTGACTAG
Seq C2 exon
GATACCCAGATACACTTGGACGATGCTCTCAGGACACAGGAGGACCTGAAGGAGCAGGTGGCCATGGTGGAGCGCAGAGCAAACCTGTTGCAGGCTGAGATTGAGGAGCTACGGGCAGCCCTGGAACAGACAGAGCGCTCAAGAAAAGTGGCTGAGCAGGAATTGATGGATGCAAGTGAGCGTGTGCAGCTCCTCCATACCCAGGCAAGTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.542
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.8=34.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCATGCTAACCGTGTT
R:
CACGCTCACTTGCATCCATCA
Band lengths:
253-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]