Special

MmuINT0103201 @ mm9

Intron Retention

Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67033904-67034500:+
Coord C1 exon
chr11:67033904-67034212
Coord A exon
chr11:67034213-67034296
Coord C2 exon
chr11:67034297-67034500
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AATGATGGTTCATTACACAGGAC
3' ss Score
5.9
Exon sequences
Seq C1 exon
GCATCTCTGGAGCACGAGGAGGGAAAAATCCTGCGCATCCAGCTGGAGCTGAACCAAGTCAAGTCTGAGATCGACAGGAAGATTGCTGAGAAGGATGAGGAGATCGACCAGCTGAAGAGAAACCACATTAGAGTCGTGGAGTCCATGCAGAGCACGCTGGATGCTGAGATTAGGAGCAGGAATGACGCCATCAGGCTCAAGAAGAAGATGGAGGGAGACCTGAACGAGATGGAAATCCAGCTGAACCACTCCAACCGCATGGCTGCCGAGGCCCTGAGAAACTATAGGAACACACAAGGCATCCTCAAG
Seq A exon
GTAGGTGGCACCAAGAGGCGGTCCCAGATGAGCGGTGTGACCCAGTCTGTGGACACAGTGTCTCAATGATGGTTCATTACACAG
Seq C2 exon
GACACTCAGCTGCACCTGGACGATGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATGGTTGAGCGCAGAGCCAACCTGCTGCAGGCTGAGATCGAGGAGCTGCGGGCCACCCTGGAGCAGACGGAGAGGAGCAGGAAGATTGCAGAGCAGGAGTTGCTGGATGCCAGTGAGCGCGTGCAGCTCCTCCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.301 A=NA C2=0.353
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0157614=Myosin_tail_1=FE(22.7=100),PF057016=WEMBL=FE(28.5=100),PF115593=ADIP=PD(39.8=41.7),PF057916=Bacillus_HBL=PD(29.2=27.2)

							
A:
NA

							
C2:
PF0157614=Myosin_tail_1=FE(14.9=100),PF057016=WEMBL=FE(18.7=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000018637





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000075147, ENSMUSP00000117569, ENSMUSP00000131759
  



Associated events






Conservation


Human
(hg38)
chr17:10496154-10496240 
LOW PSI
HsaINT0107446
(MYH1)
Human
(hg19)
chr17:10399471-10399557 
LOW PSI
HsaINT0107446
(MYH1)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:30114458-30114543 
Chicken
(galGal4)
chr18:435079-435232 
Chicken
(galGal3)
chr18:439726-439879 
GgaINT0127802
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGAACACACAAGGCATCCTCA

				
R: 
ATCTTCCTGCTCCTCTCCGTC

				
Band lengths: 
172-256

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"