GgaINT0127803 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:439179-439725:-
Coord C1 exon
chr18:439510-439725
Coord A exon
chr18:439305-439509
Coord C2 exon
chr18:439179-439304
Length
205 bp
Sequences
Splice sites
5' ss Seq
TGGGTTGAA
5' ss Score
-11.17
3' ss Seq
GTGTGGTTTATCTTCAACAGAAC
3' ss Score
7.89
Exon sequences
Seq C1 exon
GATACCCAGATACACTTGGACGATGCTCTCAGGACACAGGAGGACCTGAAGGAGCAGGTGGCCATGGTGGAGCGCAGAGCAAACCTGTTGCAGGCTGAGATTGAGGAGCTACGGGCAGCCCTGGAACAGACAGAGCGCTCAAGAAAAGTGGCTGAGCAGGAATTGATGGATGCAAGTGAGCGTGTGCAGCTCCTCCATACCCAGGCAAGTCCATGG
Seq A exon
GTTGAAAGCTTCTAGTCATTAAACATTTACATTTTTTAATAACATAACTTCAACAGACCTCTACCATTACTATTATCAGCAAGGATCATTATTCATATAAAAAGCTAATAGAACTCTAAGTAAAAGTAGGGAAATGGTTTTCACTGAATACGAGCAATGATATAAATATATATGTCATATCTGCTGTGTGGTTTATCTTCAACAG
Seq C2 exon
AACACCAGCTTGATCAACACCAAGAAGAAACTGGAAACAGACATTTCCCAAATTCAGAGTGAAATGGAGGATACCATCCAGGAAGCCCGCAATGCTGAAGAGAAGGCCAAGAAGGCCATCACCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.869
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGGACACAGGAGGACC
R:
TGGCCTTCTCTTCAGCATTGC
Band lengths:
300-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]