MmuINT0103202 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67034297-67034927:+
Coord C1 exon
chr11:67034297-67034500
Coord A exon
chr11:67034501-67034801
Coord C2 exon
chr11:67034802-67034927
Length
301 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GTGTTTGGTATTTTAATCAGAAC
3' ss Score
6.06
Exon sequences
Seq C1 exon
GACACTCAGCTGCACCTGGACGATGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATGGTTGAGCGCAGAGCCAACCTGCTGCAGGCTGAGATCGAGGAGCTGCGGGCCACCCTGGAGCAGACGGAGAGGAGCAGGAAGATTGCAGAGCAGGAGTTGCTGGATGCCAGTGAGCGCGTGCAGCTCCTCCACACCCAG
Seq A exon
GTGTGTAAATAAGTATGAAGGGGAAACTCATGCATGGATATTAACATTGTTCAGAAATATACCCATAATGTTTTATGAAGAGTTTAACATGTTTAACTGGGGAAGAGTCACAACATTTTTGTTTATCTGATCGATAACATGCAGCATCCACTGTCCTTTAAAAGTATGTTGTTAACTCAGATAATTTATGGAACCCCTGAGGGATGCTAGTCAATAACTAGTTTACAGGCTCATTTGGACATCTGGTTTTCTGACTTTGTTCTTCAATATTTAATATTTCTGTGTTTGGTATTTTAATCAG
Seq C2 exon
AACACCAGCCTCATCAACACCAAGAAGAAGCTGGAGACAGACATTTCCCAAATCCAGGGAGAGATGGAGGACATCGTCCAGGAAGCCCGCAATGCAGAAGAGAAGGCCAAGAAAGCCATCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=NA C2=0.738
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(14.9=100),PF057016=WEMBL=FE(18.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(9.1=100),PF057016=WEMBL=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTCAGCTGCACCTGGA
R:
ATCAGTGATGGCTTTCTTGGC
Band lengths:
330-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: