GgaINT0127803 @ galGal4
Intron Retention
Gene
ENSGALG00000026748 | MYH1A
Description
myosin, heavy chain 1A, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) [Source:RefSeq peptide;Acc:NP_001013414]
Coordinates
chr18:434532-435078:-
Coord C1 exon
chr18:434863-435078
Coord A exon
chr18:434658-434862
Coord C2 exon
chr18:434532-434657
Length
205 bp
Sequences
Splice sites
5' ss Seq
TGGGTTGAA
5' ss Score
-11.17
3' ss Seq
GTGTGGTTTATCTTCAACAGAAC
3' ss Score
7.89
Exon sequences
Seq C1 exon
GATACCCAGATACACTTGGACGATGCTCTCAGGACACAGGAGGACCTGAAGGAGCAGGTGGCCATGGTGGAGCGCAGAGCAAACCTGTTGCAGGCTGAGATTGAGGAGCTACGGGCAGCCCTGGAACAGACAGAGCGCTCAAGAAAAGTGGCTGAGCAGGAATTGATGGATGCAAGTGAGCGTGTGCAGCTCCTCCATACCCAGGCAAGTCCATGG
Seq A exon
GTTGAAAGCTTCTAGTCATTAAACATTTACATTTTTTAATAACATAACTTCAACAGACCTCTACCATTACTATTATCAGCAAGGATCATTATTCATATAAAAAGCTAATAGAACTCTAAGTAAAAGTAGGGAAATGGTTTTCACTGAATACGAGCAATGATATAAATATATATGTCATATCTGCTGTGTGGTTTATCTTCAACAG
Seq C2 exon
AACACCAGCTTGATCAACACCAAGAAGAAACTGGAAACAGACATTTCCCAAATTCAGAGTGAAATGGAGGATACCATCCAGGAAGCCCGCAATGCTGAAGAGAAGGCCAAGAAGGCCATCACCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026748:ENSGALT00000039878:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGGACACAGGAGGACC
R:
TGGCCTTCTCTTCAGCATTGC
Band lengths:
300-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]