GgaINT0127845 @ galGal4
Intron Retention
Gene
ENSGALG00000004333 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr18:8244546-8244957:-
Coord C1 exon
chr18:8244867-8244957
Coord A exon
chr18:8244686-8244866
Coord C2 exon
chr18:8244546-8244685
Length
181 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
TTTCTTGTGCATTTCTGCAGCAT
3' ss Score
8.19
Exon sequences
Seq C1 exon
ATCGTAAAGCTGTGATTTCTCAAGGGATGCTGAAATGCCTTGGATCTTCTCTCTTTCTGAAAAGCAAATGGGGAATTGGCTACCGCTTGAG
Seq A exon
GTACTTCTTTTGTGTGCTATCTGCTGCGTGGTATCACCTATCAGTAAGAGAGACCCTCACCCCAAAAAACATCCTTTTATCATTCTTCCGAGTGCTCAGTGTTCCTCAGGCTGCTATTCCTGATACGGGCATCAGGAGGAAAGCTAGCTTTTAAAAGCCAGTTTCTTGTGCATTTCTGCAG
Seq C2 exon
CATGCATATTGATGCCTACTGCAACACGGAAGCCACGACCTCACTGATCAGGCAGCATATCCCCGCAGCCAGCCTGATCCAGGAGAACACCCAGCAGCTCGTCTACACACTGCCACTCCGGGACATGGACAAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333:ENSGALT00000006907:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAAAGCTGTGATTTCTCAAGGG
R:
TGCAAACTTGTCCATGTCCCG
Band lengths:
228-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]