HsaINT0000713 @ hg38
Intron Retention
Gene
ENSG00000154265 | ABCA5
Description
ATP binding cassette subfamily A member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr17:69285898-69286311:-
Coord C1 exon
chr17:69286221-69286311
Coord A exon
chr17:69286038-69286220
Coord C2 exon
chr17:69285898-69286037
Length
183 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCA
5' ss Score
6.35
3' ss Seq
TGATTTTTGGTATTCTCTAGCAT
3' ss Score
7.22
Exon sequences
Seq C1 exon
ATAGGAAAGCTGTGATATCACAAGGAATGCTGAAATGTGTTGGTTCTTCAATGTTCCTCAAAAGTAAATGGGGGATCGGCTACCGCCTGAG
Seq A exon
GTATCATTCATTTTTATTGACATTATTCTATATTATACTCTTGCTATACTGTTATTATGTTGGAGGCTTGCTGTTATATGCTTTGACCATCATTTATGGTACTAAATTTAATTTAAAGCCTTCATAATTTACTTTTGGCTGTTTATTGTATAATCATTAATTGTGATTTTTGGTATTCTCTAG
Seq C2 exon
CATGTACATAGACAAATATTGTGCCACAGAATCTCTTTCTTCACTGGTTAAACAACATATACCTGGAGCTACTTTATTACAACAGAATGACCAACAACTTGTGTATAGCTTGCCTTTCAAGGACATGGACAAATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265:ENST00000392676:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATATCACAAGGAATGCTGAAA
R:
CTGAAAATTTGTCCATGTCCTTGA
Band lengths:
220-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development