GgaINT0128185 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:371802-372102:-
Coord C1 exon
chr18:372004-372102
Coord A exon
chr18:371906-372003
Coord C2 exon
chr18:371802-371905
Length
98 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
TGCTTTGTCCTTCTTCTCAGAGA
3' ss Score
9.96
Exon sequences
Seq C1 exon
ATCTGCTGGAGAAGTCTAGGGTCACTTTCCAGCTCAAGGCTGAAAGAAGCTACCACATCTTTTATCAGATCATGTCCAACAAGAAGCCAGAGCTAATTG
Seq A exon
GTAGGAACTTCTGCAAACACAGCGCACTGGACAATCTTTTTCATTCCTGTTCCATGCCAATTCTGTTTGGTCCATATGTGCTTTGTCCTTCTTCTCAG
Seq C2 exon
AGATGCTGCTGATCACCACCAACCCATACGACTATCAGTACGTGAGTCAAGGCGAGATCACAGTACCCAGCATTAATGACCAGGAGGAGCTGATGGCCACCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023884:ENSGALT00000040060:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCACTTTCCAGCTCAAGG
R:
CCATCAGCTCCTCCTGGTCAT
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]