HsaINT0107920 @ hg19
Intron Retention
Gene
ENSG00000133020 | MYH8
Description
myosin, heavy chain 8, skeletal muscle, perinatal [Source:HGNC Symbol;Acc:7578]
Coordinates
chr17:10317509-10317801:-
Coord C1 exon
chr17:10317703-10317801
Coord A exon
chr17:10317613-10317702
Coord C2 exon
chr17:10317509-10317612
Length
90 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CCCTGAATTCTGTGACCCAGAAA
3' ss Score
3.99
Exon sequences
Seq C1 exon
ATCTTTTAGAAAAGTCCAGAGTTACTTTCCAGCTAAAGGCGGAAAGAAGCTACCATATTTTTTATCAGATCACTTCCAATAAGAAGCCAGATCTAATTG
Seq A exon
GTAAGAAAGAACTTAAAGTCATAGATAGAAGTTAATATTTTTATTAACAATGTCTAATGTAAAATGTATGCCCTGAATTCTGTGACCCAG
Seq C2 exon
AAATGCTCCTGATCACCACCAACCCATATGACTATGCCTTCGTCAGTCAGGGGGAGATCACAGTTCCCAGTATTGATGACCAAGAAGAGTTGATGGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020-MYH8:NM_002472:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCCAGCTAAAGGCGGAA
R:
GTGGCCATCAACTCTTCTTGGT
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)