BtaINT0097498 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009702 | MYHC-FETAL
Description
Bos taurus myosin, heavy chain 8, skeletal muscle, perinatal (MYH8), mRNA. [Source:RefSeq mRNA;Acc:NM_001206174]
Coordinates
chr19:30054018-30054311:-
Coord C1 exon
chr19:30054213-30054311
Coord A exon
chr19:30054122-30054212
Coord C2 exon
chr19:30054018-30054121
Length
91 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CCTGAACTCTGTGTCCCCAGAAA
3' ss Score
7.58
Exon sequences
Seq C1 exon
ATCTTCTAGAAAAGTCTAGAGTTACTTTCCAGTTGAAGGCAGAAAGAAGCTACCATATTTTTTATCAGATCACTTCCAATAAGAAGCCAGATCTGATTG
Seq A exon
GTAAGAATGAACCTAAATTCACAGACAAAAGTTAAGATTTTTGTTAACTACTTTTAATGTGAAACATACACCCTGAACTCTGTGTCCCCAG
Seq C2 exon
AAATGCTCCTGATCACCACCAACCCATATGATTACGCCTTTGTCAGTCAAGGGGAGATCACAGTCCCTAGCATTGATGACCAAGAAGAGCTGATGGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009702:ENSBTAT00000061119:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTGAAGGCAGAAAGAAGC
R:
GGCCATCAGCTCTTCTTGGTC
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development