HsaINT0107799 @ hg38
Intron Retention
Gene
ENSG00000197616 | MYH6
Description
myosin heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:7576]
Coordinates
chr14:23402697-23403446:-
Coord C1 exon
chr14:23403348-23403446
Coord A exon
chr14:23402801-23403347
Coord C2 exon
chr14:23402697-23402800
Length
547 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAAC
5' ss Score
-0.27
3' ss Seq
TCACCCCTTGCCTGGTGCAGACA
3' ss Score
7.23
Exon sequences
Seq C1 exon
ACCTGCTGGAGAAGTCCCGGGTGATCTTCCAGCTGAAAGCTGAGAGAAACTACCACATCTTCTACCAGATTCTGTCCAACAAGAAGCCGGAGTTGCTGG
Seq A exon
GTGAACCTGCCTGCCACCCCCCACCCACTGCTGTCCCTGCTGCACACCCCAACGACTCCTGCATGCAGGGCAGGGCCCTCCTGCTCCCCACTGTGCCCCACCTTGCTGCTCACTTCCCTTCTCCCTCCACTCACTCCGCCAGCTCCCTCTCGCTTCCCTCCCAAGACCACCTGCGTCTCCTCTCGCCTCCCTGTGCAGTCACACACCTCACTCCTTCTCCACCCTTCTCTCCACTCCTCCCTCGGCTTGTCTTTGCCTTCTCCTCTTTATTTGCCTCCCCATCTCCCATGTGTCACTCCCCTGCCACCCTCCCTCCTCCTTGTTACTGGAGCCCCTGCCAGGGCCCCTCTTCTACCCTTTCACTTCCTCTGGGTTCACTCCTTGGTCCTTGCTGACTTCTCTTCTCTCCCTGCTCCCTGTCCTCCCTTCCTCCATTCACCCCGTCCCTTACCCCTCCCTGCCCCTCCCTCCCTTTCCCAACTCTACCTGCCCCTTCCCTGCCCTCCGCCTGCCCCCTTGCCCCTGCCTCACCCCTTGCCTGGTGCAG
Seq C2 exon
ACATGCTGCTGGTCACCAACAATCCCTACGACTACGCCTTCGTGTCTCAGGGAGAGGTGTCCGTGGCCTCCATTGATGACTCCGAGGAGCTCATGGCCACCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616:ENST00000356287:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGTCCCGGGTGATC
R:
ATCGGTGGCCATGAGCTCC
Band lengths:
198-745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development