RnoINT0096524 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33624929-33625541:-
Coord C1 exon
chr15:33625443-33625541
Coord A exon
chr15:33625033-33625442
Coord C2 exon
chr15:33624929-33625032
Length
410 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACC
5' ss Score
3.95
3' ss Seq
ACCCTCCATGCTTGACACAGACA
3' ss Score
5.03
Exon sequences
Seq C1 exon
ACCTTCTGGAGAAGTCCCGGGTGATCTTCCAGCTAAAGGCTGAGAGGAACTACCATATCTTCTACCAGATCCTGTCCAACAAGAAGCCGGAGCTGCTGG
Seq A exon
GTAACCTGACCTGACCACTGCCCATGCTGTTCCTCCCCTGGCTCTGTCCAACCTCCTTATTCCCTCTTCCCTCTGATCCGCTCTTCCTCCTCCCTCCCCATAGCTGGTCTGCACCTCTCCATGCCCTGTCAAGTACCTGCTCCTCATTTTGTGTCTTCCCTCTCTTCTCTGCCATGTTTTCTCCCCTCCCCTTCCTCTTCACATGCTTCTCCTTTTCCCACTCCATGTTCCTCCTTCTTCATGGGGGCCTTGGGGCTTCTTTCCTGGGGACCCTTGTGCCTTTACTGCTTTGGCCTTCAGTGACCATCCTCTTCTCTATCTCCTCCCTGTCCTATCTCCCTCTGCTCTTTCCCCATTCTCCCCTCCTTCCCTTTCTCCGCCTCCTGCCCTACCCTCCATGCTTGACACAG
Seq C2 exon
ACATGCTGCTGGTTACCAACAACCCGTACGACTATGCCTTCGTCTCTCAGGGAGAGGTGTCTGTGGCCTCCATTGATGACTCCGAGGAGCTTTTGGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGTCCCGGGTGATC
R:
ATCAGTGGCCAAAAGCTCCTC
Band lengths:
198-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]