MmuINT0103530 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55580004-55580664:-
Coord C1 exon
chr14:55580566-55580664
Coord A exon
chr14:55580108-55580565
Coord C2 exon
chr14:55580004-55580107
Length
458 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACC
5' ss Score
3.95
3' ss Seq
GCCCTCCCTGCTTGAAACAGACA
3' ss Score
6.45
Exon sequences
Seq C1 exon
ACCTTCTGGAGAAGTCCCGGGTGATCTTCCAGCTAAAGGCTGAGAGGAACTACCACATCTTCTACCAGATCCTGTCCAACAAGAAGCCGGAGCTGCTGG
Seq A exon
GTAACCTGACCTGACCACTGCCCTTGCTGTTCCCAGAACCTACCCATGGGGGCTCCTCCCCTGGCTCAGTCCAACCTCGTTGCTCCCTCTTCCCTCTGCTCCACTCTTCCTCCTCCCTCCTGCTAGCTGCTCTGCACCTCTCTTGATGCCCTCCCTGTCAAGTACCTCGCTCCTCATTTTGTGTCTTCCCTCTCTTCTCCGCCATGTTTACTCTCCTTCCCCTTTACATCTTCTCTTCACAGGCTTTTCCCACATGGCATGCTCCTTCTTCTTCTTCACGGGGGCCTTGGGGCTTCTTTCCTGGATCCCCCTGTGCCTTCACTACTCTGGCCTTCACTGACTGTTCTCTCTATCTCCTCCCTGTCCTATCTCCCTCCACTCTTTTTCCATTCTCCCTCCTTCCCTTTCTTTACCTCCTTCCCTCCCCATCCCTGCCCTGCCCTCCCTGCTTGAAACAG
Seq C2 exon
ACATGCTGCTGGTCACCAACAACCCATACGACTACGCCTTCGTCTCTCAGGGAGAGGTGTCCGTGGCCTCCATTGATGACTCTGAGGAGCTCTTGGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGTCCCGGGTGATC
R:
ATCAGTGGCCAAGAGCTCCTC
Band lengths:
198-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: