BtaINT0097351 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21354470-21355124:+
Coord C1 exon
chr10:21354470-21354568
Coord A exon
chr10:21354569-21355020
Coord C2 exon
chr10:21355021-21355124
Length
452 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CCTGCCCCTCGCCTGGACAGACA
3' ss Score
7.73
Exon sequences
Seq C1 exon
ATCTCCTGGAGAAGTCCCGGGTGATCTTCCAGCTGAAGGCTGAGAGGAACTACCACATCTTCTACCAGATCCTGTCCAACAAGAAGCCAGAGCTGTTGG
Seq A exon
GTGAGCCCCGTCAGAGGTCCCTGCTGCCCCTGGCACCCCCCGCAAGCCCAGCAGTGCAGGGCAGACCCCTCCTCCTCCTCACCCGCCCCGCCCCCCTGCTCACCTGTCCCCTCCCTCCATCTGCCCGGTACCTTTCTCTTCCTCCACCTTGGACCCACCTGTGTCAACTCTTGCCTCCTATTCACACCCTTCCTTGTCTTCTTTCTCCTCCCCTTTACTTCTTTTCTCCTTCTCCTCTGCATTTGTCTCCCCCTCTTCCACCTGTCACCCCCCACCATCCTCTCTCCCCATGTCCCCATCACCCACTTTTCCTTTTCTTCTGGATCCTTCCCTTGGCCTTTGCTGACTGTCCTCCTCTCTACCTGCTCCCGCTCCTCCCTTCTCCCCACCCCTTCCCCCACTGCGCCCCACTCCTGTCCCCTTGTCCCTGGCCCTGCCCCTCGCCTGGACAG
Seq C2 exon
ACATGCTGCTGGTCACCAACAACCCCTACGACTACGCCTTCGTGTCTCAGGGGGAGGTGTCCGTGCCCTCCATCGACGACTCTGAGGAGCTCATGGCCACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGTCCCGGGTGATC
R:
ATCTGTGGCCATGAGCTCCTC
Band lengths:
198-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development