GgaINT0128204 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GIG1]
Coordinates
chr18:357174-357809:-
Coord C1 exon
chr18:357691-357809
Coord A exon
chr18:357371-357690
Coord C2 exon
chr18:357174-357370
Length
320 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTACTACAACATTTCCACAGGCC
3' ss Score
7.96
Exon sequences
Seq C1 exon
GTGAATATTCACGCCAGGTGGAGGAGAAAGATGCTCTGATTTCTCAGCTGTCTAGAGGCAAGCAGGCATTCACCCAACAGATTGAGGAACTCAAGAGGCACTTAGAGGAGGAGATAAAG
Seq A exon
GTGAGGAGGTTTGCCAGAATTCTGTCTTATCCAGTGGATTTTCCTGACTAAGAGGTTTTTCATACACATATAAAATTACAGAAACATCATGTTGAGCAGGAAAAAAAAACCAAAAAAGATATTTAATTTGGTGTGAGTTATTTTATCTTTCTGACACTTACCACTTATCCTTTAAGATGTTGCAAATTCCCAGCTATTCCTTCCTCATTCTATATATTGCCATTATTCTCATGGAAGAATTATCTAGTGTCCAATAACTTTTCACTCAGGACATTTCTCAAGAAATTTCTATTCCTTACCTTACTACAACATTTCCACAG
Seq C2 exon
GCCAAGAATGCCCTGGCCCATGCCTTGCAGTCAGCCCGCCATGACTGTGACTTGCTCCGGGAACAATATGAGGAAGAGCAGGAAGCCAAGGGTGAGCTGCAGCGTGCCCTGTCCAAGGCCAACAGCGAAGTGGCCCAGTGGAGAACCAAATATGAGACGGATGCTATTCAGCGCACAGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027323:ENSGALT00000044266:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.455
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATATTCACGCCAGGTGGAGG
R:
CCTCCTCCAGCTCCTCTGTG
Band lengths:
310-630
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]