HsaINT1024149 @ hg38
Intron Retention
Gene
ENSG00000133020 | MYH8
Description
myosin heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:7578]
Coordinates
chr17:10398444-10398886:-
Coord C1 exon
chr17:10398768-10398886
Coord A exon
chr17:10398641-10398767
Coord C2 exon
chr17:10398444-10398640
Length
127 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CTGAACTGCTACTTCTGCAGGCC
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTGAATATTCTCGACAATTAGATGAGAAAGATGCTTTAGTCTCTCAGCTTTCAAGGAGCAAGCAAGCATCTACTCAGCAGATTGAAGAGCTGAAACATCAACTAGAGGAAGAAACTAAA
Seq A exon
GTGAGTTTTGCCAAGGATTTTTTTGACTAACCAAATCTAAACCTGCCCAGTTAGGCTCTACTTGGGATGTGTAAGTTAAATATCACTGAATACATGAATTTATGTCACTGAACTGCTACTTCTGCAG
Seq C2 exon
GCCAAGAACGCCCTGGCACACGCCCTGCAGTCCTCCCGCCATGACTGCGACCTGCTGCGGGAACAGTATGAGGAAGAGCAGGAAGGCAAAGCTGAGCTGCAGAGGGCGCTGTCCAAGGCCAACAGTGAGGTTGCCCAGTGGAGAACCAAATACGAGACGGATGCCATCCAGCGCACAGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020:ENST00000403437:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=0.591
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTTTCAAGGAGCAAGCA
R:
TGGCATCCGTCTCGTATTTGG
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains