GgaINT0128376 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:490198-490692:-
Coord C1 exon
chr18:490556-490692
Coord A exon
chr18:490454-490555
Coord C2 exon
chr18:490198-490453
Length
102 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
ACATTTCAATTATGCTTCAGGGA
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTGTTCTTCAAAGCTGGGCTGCTGGGACTCCTGGAGGAGATGAGAGATGAGAAGCTGGCACAGCTCATCACTCGCACACAGGCCAGGTGCAGGGGCTTCCTGATGAGAGTGGAGTACCAGAGAATGGTGGAGAGGAG
Seq A exon
GTAGGTGTTCCCCATCTTCAGTTAAAGACACTGTATTTTGGGGGAAGTGCTGAGGATCATATCACACAAAATAATCAAATGTACATTTCAATTATGCTTCAG
Seq C2 exon
GGAATCCATCTTCTGCATTCAGTACAATGTTCGTGCATTCATGAATGTCAAGCACTGGCCCTGGATGAAGCTGTTCTTCAAGATCAAGCCCCTGCTGAAGAGCGCAGAGTCTGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAGACCAAGGAGGAGCTTGCAAAGTCTGAGGCAAAGAGGAAGGAGCTGGAGGAGAAAATGGTGAAGCTGGTGCAGGAGAAAAATGATCTGCAGCTCCAAGTGCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.4=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGCTTCCTGATGAGAGTG
R:
AGCTCCTTCCTCTTTGCCTCA
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]