MmuINT0103425 @ mm9
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:66998884-67000242:+
Coord C1 exon
chr11:66998884-66999020
Coord A exon
chr11:66999021-66999986
Coord C2 exon
chr11:66999987-67000242
Length
966 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
TAGCAACCACCTTATTTCAGGGA
3' ss Score
4.76
Exon sequences
Seq C1 exon
GTCTTTTTCAAAGCTGGTCTTCTGGGGCTCCTAGAGGAGATGAGAGATGACAAGTTGGCCCAGCTTATTACCCGGACCCAGGCTATGTGCAGAGGGTTCTTGGCGAGAGTGGAGTACCAGAAGATGGTGGAGAGAAG
Seq A exon
GTATAAAAATGCATAGTTTATTCACATCTTGTGTCGAAATAGACTTCTGTAGGAAAGTGGGGGAACCTGAGTTCTGCCAGCATGGACTATATCGTGAGTGTCTGGGTGAAAACTCAAGAAGCATCAGGCATAGATAGTTTTATATATTTTTTTAATCTAACACTGAAAAATACACTAGTGAGTAGGCAGAGATAAAATTTTGCCGTTCTGTTTATTTCTAATGAGGTTCTATTAGATATATCATTAAATGGAGGACCTTAAAATGTATAGTAATTTCAAAAAATGGCTTTATATAGTTTTTATATAAAACAATTTCTTCAGTTGAATTATTTCTATTATTGAACTATCATAATTTAAAATAGGGTATTTGTGAAGATCTTTCCACAATAGGCTACTACAATATCATCAAGGGAGTTAACTTCCTGGTAGTCTAGTTGAAGAACTAATATGTGACAGAGCCTGATGTCTGAGGACCGGAAATGAGAAGTGTGTTATACATGGCCATCTGTGCATCCACACACATGAACAAGTCTGTGTGCACACACAAACAGGTTGCACAACACAACTTTTATTACTTGAAGTTATGCTTATTTTTTCTAATCACAGTCACTATGCTATATTTGGGTAGCTAACTACCTATATATGATGGTCAATAATTTTTAAATAACCTAGATTAAGGCAAATGTAACATTATAAATTAGAATGCTACATTCATACAGAGTCAGTATTTTTGAACAAGCTCTTCAGATGATCTCAACCATGTCCAAGGTTGAGACACAATGGTGTAGAGAAGTTGGTTACAAGTCCTTGAGCATCGCCATGAAATATAACTTTTCTGATCTGCAAGGTTGACTGCAAATAGAGAATAGGGTGGGATGGAGGGGGACCAAAGCTGTGACATTCACTCCTGAAATTTATATTCGCTCCGTCATCCACTGTATCTAATTAGCAACCACCTTATTTCAG
Seq C2 exon
GGAGTCCATCTTCTGCATCCAGTACAACATCCGCGCCTTCATGAACGTCAAGCACTGGCCCTGGATGAAACTCTTCTTCAAGATCAAACCCCTGCTGAAGAGCGCAGAGACCGAGAAGGAGATGGCCACCATGAAGGAGGAGTTCCAGAAAACCAAAGATGACCTTGCCAAGTCAGAGGCAAAGAGGAAGGAACTTGAAGAAAAGATGGTGTCCCTCTTGAAAGAAAAAAATGACTTGCAACTTCAAGTTCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-Myh2:NM_001039545:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.7=61.6),PF135141=AAA_27=PU(7.3=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACAAGTTGGCCCAGCTT
R:
AGCCTGAACTTGAAGTTGCAA
Band lengths:
348-1314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: