GgaINT0128789 @ galGal4
Intron Retention
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4534190-4534891:+
Coord C1 exon
chr18:4534190-4534313
Coord A exon
chr18:4534314-4534765
Coord C2 exon
chr18:4534766-4534891
Length
452 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACA
5' ss Score
4.87
3' ss Seq
CTTTACTTTCATTTGCGCAGAAA
3' ss Score
7.73
Exon sequences
Seq C1 exon
CATCCAGCAGCTCCATGAACGTGTGACGCAGCTGTGTGCAGAGTACCGGGACCTCTATGAGAAACTGAACGTCCCCGATATCGGGCCCAGGGTGGACTGGACAAAGATCTTGGACCAAAAGATG
Seq A exon
GTAACAGCAGCTGCTTTTCACATGTACCCCCCAAATCCTTCAAGGTCGGATAATGCCCACGGGGCTCCGCCAGCCATCGTATGCTCAGCAGCATGCAGGGATGTTATGGGTTTGGTGGTGGAGCTAACTCAAGTGGTCTGGATAGGAGAACTCTCCTTCCAGATCTTAAAACCCATTGGAGGATCCTCTGGATCGACCCATTCAGATTAAGAGCAAATAGAAAGGGATTAAGTAGAGATGCCATGATAGAAGGATAGGGAAGGTGGTGTCTCCAAGGACTTTTAGCCCTACATCCTAGGTTGTACATCCTTGACTGCCCAATATGGCAAACACCACTGAGATCCCCTCCCTTCCTCCCAGGCTGGTATTGGATCTTTCCATAAAGATCCTGCCAGCATGCACTGTGGTTTCTCCCTGAAATATGGTATTTTGCTTTACTTTCATTTGCGCAG
Seq C2 exon
AAACAAGTCAGTGCAGGACAGTACGGCCCCGGCATGTCAGAGCTGGAGAAGCAAATAGCTGAGCACAATATCCTCCAGAAGGAGATTGAAGCCTATGGCCTTCAGATCAAGAACCTGCGCTGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGCAGCTCCATGAACG
R:
ACAGCGCAGGTTCTTGATCTG
Band lengths:
247-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]