HsaINT0058510 @ hg19
Intron Retention
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:3503]
Coordinates
chr17:74018494-74019499:-
Coord C1 exon
chr17:74019373-74019499
Coord A exon
chr17:74018620-74019372
Coord C2 exon
chr17:74018494-74018619
Length
753 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
AGCCGCCGGCTCTCCTGCAGAAG
3' ss Score
6.75
Exon sequences
Seq C1 exon
CATCAAGCAGCTGCACGAGCGGGTGACCCAGGAGTGTGCGGAGTACCGTGCCCTGTACGAGAAGATGGTGCTGCCCCCCGACGTGGGACCCAGGGTCGACTGGGCACGCGTGCTGGAGCAGAAACAG
Seq A exon
GTCAGGAACTCAAAGTCACACCCCAGTGTGATCAGAGGGCGATACGGAACTGCATTTAATCCAGGGCCTGACTGCAGGCTTGAATAGTCAGGGTGTAGGGGTGGCTCAGGGGTCTGGGCAGAGAGACAGCAGAGTAGACAGTGCAGTCAGGGAAGACTTCCTGCAGGAGGAGGTACATGAAGAGACCTCAGAGGGGTGAGAGGGCTCAGTTGGGCCAGGGTGAAGTAGTGAGGAGAGGACAATTCCAGAAAGAAGGAGCAAAGGTTCCTGCCAGGAGGAAGCCTGGGCTTCGACGGGAAGTGGGGATTTCTGGGCAGGTGGGCAGAGCCAGGTCATGGGACATTCTGATCCCTGGTTGAGGAGTTGTGCTTTGATGCCACACAGAAGGGGTGTCATCATGACAATAGAGGGACAGTGGGGAAGGGCCCGGCTGGAGCAGGGCATTCTGAGGGCCCTAGAGCTTGGCTGGTGGTGTCCAGGCAGGAAGCACTGAGGCTGGGTCACAGACAAGGCAGGATGGAGCTGGAGACTTCTTAGAGGCTGAGCCCAGCGTCTGGGAACCAGTGGGACTCAGGGGCCACTGCAGAATGGCCTCGCCCCTGGGGGAGCTGCAGGGCATGCACCCGGGCTGCTCCCAGGCTCGTCCACGCTCTGCCCAAATGACCAAGTCCACTTCTCCGGGTGGGAGGCGTGTGGGGTTCTCTGGCTCCCCACCGCGGTCCTTTGGGGACTGAGCCGCCGGCTCTCCTGCAG
Seq C2 exon
AAGCAGGTCTGCGCAGGCCAGTACGGGCCGGGCATGGCGGAGCTGGAGCAACAGATCGCCGAGCACAACATCCTGCAGAAGGAGATCGACGCCTATGGGCAGCAGCTGCGGAGCCTCGTGGGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880-EVPL:NM_001988:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAAGCAGCTGCACGAG
R:
CCCATAGGCGTCGATCTCCTT
Band lengths:
226-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)