RnoINT0057019 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105112577-105113492:-
Coord C1 exon
chr10:105113366-105113492
Coord A exon
chr10:105112703-105113365
Coord C2 exon
chr10:105112577-105112702
Length
663 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
AGGACCTGGCTCTTCTGTAGAAG
3' ss Score
3.39
Exon sequences
Seq C1 exon
CATCAAGCAGCTGCACGAACGAGTGACCCAGGAGTGTGCGGAGTATCGAGCTCTGTATGAGAAGATAGTGCTGCCGCCGGATGTGGGGCCCAGGGTCGACTGGACACGGGTGCTGGAGCAGAAACAG
Seq A exon
GTCAGGGGCAGCCATCGACGGACACATTCTCAAGGAGCTCAGAACCACAGCCGGTGCGGTCAGAGAGCAAGGCAGAATGGTGTCTGTTGGAGCTTTAACTTCGAACCTGGGAGGAGCTCAGGGATGGAGGAGGGGAGGCTTCCTGTAGAAGTCAGGAAGAGGTGGAAAGAGGTAGCTCGGTCACAGTGATGAGTGGGGACCTCCTGGGAAGGCAAAAAGGCTCCCTCTGGGAAGACTGAGGTTGGATGGGCAGTGGACATACCAAGTCACAGGACGCTGAGCAGTTGTGTTTGATGCATTGTGACGGGAACCAGGGACCATGGGGCAGGGCAGGTCCTGGGTCTGGCTGGATATGTCCAGGCATCGGTTGCTGAGGCTTGGGCGAGAGATAGCCCAAGAGTAGAGCATGAATCCTGAGAACCAATGGGACTCAGGGCCTTAGTCCTGACCGCCACAGGACAGCAGTAGTGTCCCAGCTATGGGGAACAGCTACCATTGCCCCAGGCTGCTTACCCAGCCTGTCCACTCTTTGCCTCTATGACTAACTCTGCTCTCCTGTTGTGGGGAGGACACAGGTGGCTGTGGGGGGTGGGGTGGGAAGGGTTCTCTGGGCTGCGGGACATAGACCTTCCTGGTAGGACTGAGGACCTGGCTCTTCTGTAG
Seq C2 exon
AAGCTGATCTGTGAGGGCCACTATGGGCCTGGGATGGCAGAACTGGAACAGCAGGTGGCCGAGCACAACATCCTGCAGAGGGAAATCGAGGCTTACGGGCAGCAGCTGCGGACACTGGTGGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAAGCAGCTGCACGAAC
R:
CACCAGTGTCCGCAGCTG
Band lengths:
247-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]