DreINT0065104 @ danRer10
Intron Retention
Gene
ENSDARG00000019808 | evpla
Description
envoplakin a [Source:ZFIN;Acc:ZDB-GENE-030829-19]
Coordinates
chr6:17961591-17964364:+
Coord C1 exon
chr6:17961591-17961714
Coord A exon
chr6:17961715-17964232
Coord C2 exon
chr6:17964233-17964364
Length
2518 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
ACTAATTTTTAATATTACAGAAA
3' ss Score
6.12
Exon sequences
Seq C1 exon
TGTAAGTCGCCTTCATGAGCGTTGGCTGAAAGACTGTTCCCTTTACCGAGAGCTGTATGAGCCATTGAACGAGGTGGAACTTCAACCAAGAATTAACTGGGCTCTGGTACTAAACCAAAAACAG
Seq A exon
GTGTGAATACACATTCAATATATTGATTTACTTTTGTATACATTATCAAAAGTACCTTAAACTTAACACATTATGGTAAGACATTGTAAATCTAAATTTCGTCCCCTCGGTGATATCACTTCATTATTTTTTTACATCCATTCCAAACCCAAATAAAATTTGAATCGTTAATAAAATGTATGCAATTGAGTTTGCACATTGCATTTCCAGTAGAGTAAACATGCTATGCTATGTGCTTCATTTTGTTCATCATTAGCTTAAACCGTAAAAGATTAGCTCAAAATGGGAGAAACTACACTGAAAAAAACTCTGTACCAATCAGAGATGAATTGGTTAGAAATAATAAAGGATCCCACATCATCTGTGCAAGGTTGCGAGTCTGCTTGCTGTGCGAGAAAACCTCTCACCATTTAACAAATTTGATGAACTATTCCCCCATTGTACATGGACACCAATAAATGATTAGGAAACAAGGATGCACAAACGAGAATTAAAAAGCACCACAGCACCCTTTTCACATTTCCGGGTTTCTCAGTAGCGGAAGTCGTCATAGTCAAATACATTACATAGGTAAATTGGAGCGCAGTGAGTGGGAAAGTATTACAAAATCTTTTTTTACAACCCTATTTTCTTAAAAAGACTGATAATGGCAGCCAGAAGAGAGAACAAGGTAAAATTTACTGTCCTGCCCCCATATATCCTGTATTACAGACACCTCCTAAAAGTGGTAATTTTATTTTATTTTTTTGTAATTTGATGCAGAGATAAAATAATAGATATGTAAATATATATAAATATACATACGTAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATTAAAAACTTTTAAGGTTATGATGCATTTAACGGTCAACAGCATCTTAAATCCATCTTGTAAAAAGAGTCCATTAAACACAAATCGAATTAAGATATGAGCCCCTTATTTCACACATACAGAACTGTCCAGAAAATTATTGTCAATTTCTGGAAACGTTTGTATGTCTGAACAGGCCCTTTTTGAAAATACTGGTAAATTTGCTCCGGCAATTTACCTGAAAGAGAAGTTGTAACATTACCTGTAATTTTCCGGAATCCTACGCGGTGTGATCACAAAAGTAAGATTGCCGGAAAGAGCGTGTTCTAGAGCTACTCCAGCCAATCAGAACATTCAGACACATTCACATACATGCTGTTTATGAAAATAAAAGCCTTTGGATTCTTTTCCAGACACATTTAGCTGCTAGATGTTAGTCAGATAATGTTTAGTCTAGGTTTCTATGAATTTTTAATATAGTCAAATATGTAAACATTTAGCTGCGGTTAGTGCTTCTGCTTTTGGATGTCTCTGGGATAAGCTGCATGAATGCTAAGGCTTTAAAAAAAGTGAAATCATGAACATCGCTTTTTCGAATTAACCAGTAAAGTCGTTCCGTTATTTTTCCGGTATCACTGTGTGAAAGGAGCTATAGAGTATTCCTATAGAGCACAGAAATCTATGCAACGGAGAGTTGCGGTCAGCCATGTTTGTGGACAAACGCAGGAATGCACATTTTAAACCAATGCAAATCATAACAGAAAAAAACTACGGATTTATAGTAATATCTTTTGATTTAAAAAACATCTCACAAACACTCAGAATAAAATGGTCAAACATCTAGATATCTTTTTGAATGCTCTGTGTGTCTGGGAAGCTGATAATATATATACCATAATATTCTGTGTCCAGCGGTGAAGTGTAACTTGAGAAGCTAAGGATAGATGCAGAGGGGGCGAATCCAGAGCGGATCAAATAAATGAACATGTTTATCCAAAACTGACAGGGTATCAATGAGCTGTTGCAAGGAAACAGTACCAGATATGATTTTCTTTATTATTTGAAGAATGCATTGTGCTTCAAAAAAAAGATTCTCATTCTCTAGAGTATATAAAGAAGGATTTTAATTGTTTCAGAAACCCAGTTCAAGTGCTTCCAATAAACTGCATGCCATCACAAAATCGCCATCTTTAACATCTATTTTTTTTTAAATCAATGATCTTCACACTTTTATTCTGTCTGGAAAATGCAGGAACTTTTTTTTCAATTTGGCATGTGCGGTATCATATTCCAGTAAAACGACACTCTCCCACCAGTTCTTACTTCATACTCACATTCAATACCTCAAAGTTTTTCTCGGGGCATGAATGAAATGTTGCTTAATGAAAGTGAAACTGCCGAACTGCAAAATAAAAAATGAAACGTCCTAAATTACATGGATAGCATGGTGATGTAAAGACAGTAATTGATCTACAGTATGTACTATAAGGAAAACATAAATGGAACATTATAAAAGCCACCCACATCATTCATATTAGTGCCTTATTTAGATTAAGGTAAATAATTTGATTGCTGATGACCATGTAAATGTAGAGACACTGTATAATCCCCTATAGTCAAAATATATTGATTATTTGGTTTCTCTGACTAATTTTTAATATTACAG
Seq C2 exon
AAAGATGCAAGCAAAGAGGAGTATGGCCCAACACTGGCTGACCTGAAAAAGCAGATCGCAGCTCATAACATCCTTCATAAAGAGATTGAGTCTTATAACAATCAGCTAAACCCTGGATCAACCAGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019808:ENSDART00000143263:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.466
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(12.9=19.0)
A:
NA
C2:
PF0043516=Spectrin=FE(69.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]