HsaINT0058520 @ hg19
Intron Retention
Gene
ENSG00000214860 | EVPLL
Description
envoplakin-like [Source:HGNC Symbol;Acc:35236]
Coordinates
chr17:18284917-18285952:+
Coord C1 exon
chr17:18284917-18285044
Coord A exon
chr17:18285045-18285826
Coord C2 exon
chr17:18285827-18285952
Length
782 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
AGCCGCCGGCTCTCCTGCAGAAG
3' ss Score
6.75
Exon sequences
Seq C1 exon
CATCGAGCAGCTGCACGAGCGGGTGACCCAGGAGTGTGCGGAGTACTGTGCCCTGTACGAGAAGATGGTGCTGCCGCCCCGACGTGGGATCCAAGGTCGACTGGGCACACGTGCTGGAGCAGAAACAG
Seq A exon
GTCAGGAGCTCAAAGTCACACCCCAGTGTGATCAGAGGGTGATACGGAACTGCATTTAACCCAGGGCCTGACTGTAGGCTTGAACAGTCAGTGTATAGTGGTGTCTCAGGGGTCTGGGCAGGGAGACAGCAGAGGAGACAGTGCAGTCAGGGAAGACTTCCTGTAGGAGGAGGCACATGAAGAGACCTCAGAGGGGTGAGAGGGCTCGGTTGGGTCAGGGTGAAGTAGTGAGGAGAGGACAATTCCAGAAAGAAGGAGCAAAGGCACCTGCCAGGAGGAAGCCTAGGATTCGATGGGAAGTGGGGATTTCTGGCCAGGTGGGCAGAGCCAGGACATGGGGCATTCTGATCCCTGGTTGAGGAGTTGTGCTTTGATGCCACACAGAAGGGGTGTCATCATGACAATAGAGGAACAGTGGGGAAGGGCCCGGGTGCAGCAGGGCGTTCTGAGGGCCCTAGAGCTTGGCTGGAGGTGTCCAGGCAGGAAGCACTGAGGCTGGGTCACAGACAAGGCAGGATGGAGCTGGAGACTTCTGAGGCTGAGCCCAGCGTCTGGGAACCAGTGGGACTCAGGGGCCACTGCAGAATGGCCTCTGCAGTGGCCACCCTGCAGAGCAGAATGGCTCACCCTGGGTGAGCTGCAGGGCGTGCACCCGGGCTGCTCTCAGGCTCGTCCACGCTCTGCCCAAATGACCAAGTCCACTTCTCCGGGTGGGAGACGTGTGGGGTTCTCTGGCTCTCCACCCTGGTCCTGTGGTGACTGAGCCGCCGGCTCTCCTGCAG
Seq C2 exon
AAGCTGGTCTGCGCAGGCCAGTATGGGCCGGGCATGGCGGAGCTGGAGGAACAGATCGCGGAGCTCAACATCGTGCAGAAGGAGATCAACGACCAAGGAGAGCAGCTGCGGAGCCTGGTGGGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214860-EVPLL:NM_001145127:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGTGTGCGGAGTACT
R:
CTCCGCAGCTGCTCTCCTT
Band lengths:
214-996
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)