GgaINT0129350 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:398985-399321:-
Coord C1 exon
chr18:399218-399321
Coord A exon
chr18:399124-399217
Coord C2 exon
chr18:398985-399123
Length
94 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
CTCACTTCTTCCTTTGTTAGAGT
3' ss Score
7.49
Exon sequences
Seq C1 exon
AGATGCTGCTGATCACCACCAACCCATACGACTATCACTATGTGAGTCAAGGCGAGATCACAGTGCCAAGCATTAATGACCAGGAGGAGCTGATGGCCACCGAT
Seq A exon
GTAAGAAATGCACAGAAGTTTTCTTGGGTGGACTCTGACCTGGAAGCAAGCATGGTACTTATGTCTAAGTATTCCTCACTTCTTCCTTTGTTAG
Seq C2 exon
AGTGCCATTGACATCCTGGGCTTCACTCCTGATGAAAAAACAGCCATTTACAAGCTGACGGGGGCTGTCATGCACTATGGCAACCTGAAGTTCAAGCAGAAGCAGCGTGAAGAGCAGGCAGAGCCCGATGGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.213
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGCTGATCACCACCAA
R:
CCCCCGTCAGCTTGTAAATGG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]