MmuINT0103492 @ mm10
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67243425-67244735:+
Coord C1 exon
chr11:67243425-67243528
Coord A exon
chr11:67243529-67244596
Coord C2 exon
chr11:67244597-67244735
Length
1068 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
TAATTCAATTCTTTCAACAGACT
3' ss Score
6.87
Exon sequences
Seq C1 exon
AGATGCTTCTGATCACCACCAACCCATATGACTTTGCTTACGTCAGTCAAGGTGAAATCACAGTGCCCAGCATTGATGACCAGGAAGAGCTGATGGCCACAGAC
Seq A exon
GTAAGTCATCTATTATGGATGAGTATATGTACATGTTGGGGAAGAGGCGGGAGATAGTACGTAACCCTCTCTTCTATCAGAGTGAAATGGACTAGCACAAACAGTGGGTCAGACAGGGCTACCTTTCAGGCTTTTTACATTTGGGGGAAAATATCACAGATTTAAATGCCACCCCACACATGCATTTATGTCTCCTATCTGCAATAAATGTTAGGTACCTGTCATCCCTCACCTAGCTGGGTCGTTTTACTTTTTATGGTGTTAGTCACTCTTGGCTCAACACTTGTACCCTATAATATAGTGATTTCTTTTCTACCTTATGTTAGTCTCCTTACTCTGAAATCTTGGAAAAGCTGTCATATTAGACTATTCTGAAAAGTTTTTAAAAAGTGTAACAACCTCACTCCAGGGCCTTGTTAATAATGTGTAGTTTCAGGATGAGGTAGCCCTAGCCAGCTAGGACTAGAAGAAAGGAGGAAGTTTTGGGAGAGACACACTTTAATATACCTCTTCTGATGCTGACTTCTCTCTATAAGCCACATCAATGTTTAGAATGAGTAACTAAGAACGTAAACAAAATCCGATAGAGCAGAGAATAAAACAGAAAGCATTTCAACAAATGTGAATGGTCAGGAAAAATTTATGGTCAGTTAAGCTGTGACCTGATATCAGAGAAATGTGTGGAGAAACAGTGGGAGCCAATGCTCTTCTCATGCCTCTTTCCGGAGTCATCCATATCAAGTGAGGTGGGAGGTTGGCAAACTGGGGCTGTGCATTTAGTTAGGGCAACATAGGGGAAGAAGACACAAGCTGGGAGAGAAGAAACAAGAAAGTGTGTGGATAGTGCACATGCTGTCTTAGCACCCACAATACTCATTATGGAAAGACTAATCTATGTCTCCTAATGTTACTCTGTGGATCAGAGAAGAAACGGACTTGCAAGCCATCAGAGCATTAGTCAGATATAAGGCAAATCATGGTGAGGACGTGGGAAGCCAGACCCTTCAGTGTCCCCAGCAAGCTGGCAGGCCATGGTGATAATTGTTGGTAATTCAATTCTTTCAACAG
Seq C2 exon
ACTGCTGTTGATATCCTGGGATTCAGTGCAGATGAAAAGGTGGCCATTTACAAGCTCACAGGCGCTGTGATGCATTATGGGAACATGAAATTCAAGCAAAAGCAAAGGGAAGAGCAGGCTGAGCCAGACGGCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003:ENSMUST00000018632:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTGATCACCACCAACCC
R:
CTCAGCCTGCTCTTCCCTTTG
Band lengths:
223-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types