GgaINT0129352 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X4]
Coordinates
chr18:394393-394840:-
Coord C1 exon
chr18:394722-394840
Coord A exon
chr18:394543-394721
Coord C2 exon
chr18:394393-394542
Length
179 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTTGTTTTGGTTTTTTTTAGGTG
3' ss Score
12.01
Exon sequences
Seq C1 exon
TTGCTGACAAGGCTGCTTACCTGATGGGTCTCAACTCAGCAGACCTGCTCAAGGCCCTGTGCTACCCCCGAGTCAAAGTTGGGAATGAATTTGTGACCAAGGGTCAGACTGTGCAGCAG
Seq A exon
GTAACAAAAATCTGGTGTTTGACAACTGACACCTCTTTCAATAACAAGCTCTATGACCAGCATCTGGGCAGTGTTTGATAGCTGATACCCTAGACTTTCACTTTTGTTCTGCAGGATAATTGCAAATCTTATGTTTTTTTTTGTTGTTGTTGTTTTTGTTTTGTTTTGGTTTTTTTTAG
Seq C2 exon
GTGTACAACTCAGTTGGTGCCCTGGCAAAGGCTGTCTTTGAGAAGATGTTCTTGTGGATGGTTGTTCGCATCAACCAGCAGCTGGACACCAAGCAGCCCAGGCAGTACTTCATTGGTGTCCTGGACATCGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028102:ENSGALT00000001420:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCTGCTTACCTGATGGG
R:
ATCTCAAAGCCAGCGATGTCC
Band lengths:
255-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]