MmuINT0103494 @ mm10
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67245445-67245813:+
Coord C1 exon
chr11:67245445-67245563
Coord A exon
chr11:67245564-67245663
Coord C2 exon
chr11:67245664-67245813
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AACGGATGCTCTTCCTGAAGGTG
3' ss Score
4.88
Exon sequences
Seq C1 exon
TTGCTGACAAGGCTGCCTATCTGACAAGTCTGAACTCTGCTGACCTGCTCAAAGCCCTCTGCTACCCCAGGGTCAAGGTCGGCAATGAGTATGTCACCAAAGGCCAGACGGTGCAGCAG
Seq A exon
GTAAGTGTGATTCAAGCCCCTGATTCACTTGAACCACTGGAGACTTAAAAGTTTGTCCCTGCGTCCAACTCAAACAACTAAACGGATGCTCTTCCTGAAG
Seq C2 exon
GTGTACAACTCCGTGGGTGCCCTGGCCAAGTCCATGTATGAGAAGATGTTCCTATGGATGGTCACCCGCATCAACCAGCAGCTGGACACCAAGCAGCCCCGGCAGTACTTCATCGGGGTCTTGGACATTGCTGGCTTTGAGATCTTTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003:ENSMUST00000018632:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACAAGGCTGCCTATCTG
R:
TGTCCAAGACCCCGATGAAGT
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types