HsaINT1024103 @ hg38
Intron Retention
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10459952-10460321:-
Coord C1 exon
chr17:10460203-10460321
Coord A exon
chr17:10460102-10460202
Coord C2 exon
chr17:10459952-10460101
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
AACTATCACTTCTGTTGAAGGTG
3' ss Score
5.89
Exon sequences
Seq C1 exon
TTGCTGACAAAGCTGCTTATCTGACAAGTCTGAACTCTGCTGACCTGCTCAAATCTCTCTGCTATCCCAGAGTCAAGGTCGGCAATGAGTTCGTAACCAAAGGCCAGACTGTGCAGCAG
Seq A exon
GTAAACATGACTTAAATTGTCTGATTTATTTGAACCGCAAGTGACTCAGGAGTTCATCACTGTTTTCAATTTAAAAAACTAAACTATCACTTCTGTTGAAG
Seq C2 exon
GTGTACAATGCAGTGGGTGCTCTGGCCAAAGCCATCTACGAGAAGATGTTCCTGTGGATGGTCACCCGCATCAACCAGCAGCTGGACACCAAGCAGCCCAGGCAGTACTTCATCGGGGTCTTGGACATTGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424:ENST00000255381:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACAAGTCTGAACTCTGCTG
R:
TCTCAAAGCCAGCAATGTCCA
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains