GgaINT0129356 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X4]
Coordinates
chr18:391399-392192:-
Coord C1 exon
chr18:392119-392192
Coord A exon
chr18:391487-392118
Coord C2 exon
chr18:391399-391486
Length
632 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATTTGTTCTTGCTTCCACAGGAG
3' ss Score
10.76
Exon sequences
Seq C1 exon
AGAGTGGTGGTGGTGGCAAGAAGGGAGGCAAGAAGAAGGGTTCTTCTTTCCAGACTGTATCAGCTCTTTTCAGG
Seq A exon
GTAAGTACAGAAGTAATTGTCTCTTGATCTTTCTCATTTTACTGAACCTGTTAACATTTTTCTTTGTATCAAAAACATATTTTAAGTTATTCATGAAAGGGCTAACTTCAAGTCAGATGAGGCCAGGGGAAAGATAGATACTGATTTAGTCTCTCCTTGAATGTTTGAAAAAGTAGCCTAGGTCAGGCTACAGTTTCATTTAATTATATGCATGTGGGTTAGTAGGACTAAGCTCTCTTCTGTCCTGGAAGGACAATGGTGGATATGGATGTCTGTCTGAAGGAGTGTCTAGTCTGGATCTGCACATGCATTTGCAAATGAATATACACATGAAGTCAAAGCAATAGGGAAATGCCAACACCAGCTATCACCCCTCCACAGTGTAAGGCAGATGGAAACACTCTTATTTGAACGCTAGATATGATCTGGCATCCCGTACAGTTTTTCATACTCAACAGCTTTGCCATTACTCCAAACCAGGACTTCAAGACTAAAAACTATTAAAAACCTCAAATTGGTATGGTACTACATGGGAATATCAAGTCCATTATTCCTTTACAACAGCTCCAATATCTCACAGAACTGCAGAGTTAACATTTGTTAATGAAAAACATTTGTTCTTGCTTCCACAG
Seq C2 exon
GAGAACCTGAACAAGCTGATGACCAACCTACGGAGCACTCACCCCCATTTTGTGCGCTGTATCATCCCTAATGAAACAAAAACTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028102:ENSGALT00000001420:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]