BtaINT0097285 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30092648-30093378:-
Coord C1 exon
chr19:30093308-30093378
Coord A exon
chr19:30092736-30093307
Coord C2 exon
chr19:30092648-30092735
Length
572 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAG
5' ss Score
3.14
3' ss Seq
CTTTTAACATGGTTCCACAGGAG
3' ss Score
8.28
Exon sequences
Seq C1 exon
AGGGTGGCGGTGGAAAGAAAGGTGGCAAGAAGAAGGGTTCTTCTTTCCAGACTGTGTCAGCTCTTTTCAGG
Seq A exon
GTACAGTATATTCTTGAATTCCAAAGGATTACTTTTGTAAAAAATAATATTAACATAACTTAAAAAATTATTTTAAAGAAATATATGGTGAAACTGAGGTAGTGACATACTAAAAAAAAAAAAAAAACTGGAAAATTCCTTAAGGAAAAATTTAGCAAAAAGACCCATGGTGTGTCTCTTCTTCATGTAAACTTTTAGGATAAATTACTCATTTACCCCTTAAGCCCAATATCTAAAAGCCCTGCTAGTAAGCAAATTTCACATGAAATCAAACCCTCTTTGAAGCAGATGTAGTCAGTTACATCTATTTCACATGACTGAAGTCACAATACAAATTTTCTCTGATTGGCAGTGCTTGAGGAAAATAAACTGAAGTTGGCTGATTTTTTGTAATCCATTATTTCCTCTCTATAATCCATACATATGATTTCTCATGGTCATTATGACTTGTTCTTCATTGAGACAGCTCATTAAAAAGTGAAATGGGGACAAATTCACTAAGGATCATCGATAGGAACTCTCTTGTTGATGCAACTAGAAATTATTTTGAAACTTTTAACATGGTTCCACAG
Seq C2 exon
GAGAATCTGAATAAGCTGATGACCAACCTGAGGAGCACTCACCCCCACTTTGTACGCTGCATCATCCCCAATGAAACTAAAACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development