DreINT0099997 @ danRer10
Intron Retention
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5240527-5242899:-
Coord C1 exon
chr3:5242712-5242899
Coord A exon
chr3:5240649-5242711
Coord C2 exon
chr3:5240527-5240648
Length
2063 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
AATGTCTGTGTGTGTGTCAGGCG
3' ss Score
7.89
Exon sequences
Seq C1 exon
TGGACCGCATCGTGGGTCTGGATAAAGTTGCTGGGATGTCGGAGCTGCCGGGAGCCTTTAAGACTCGTAAGGGAATGTTCCGGACGGTCGGGCAGCTTTATAAAGAGCAGCTCTCCAAACTCATGGCCACGCTCAGAAACACCAACCCAAACTTTGTCCGCTGCATCATTCCCAACCACGAGAAGAAG
Seq A exon
GTACAGACATGTCCTCGGCATTACTACAGTTATTATTACAGTAAAAACATACACACCGCTAAAACAAGCTGTGAGATACTAACTTTCACTTTAACACTGTAACCAACTACAATCATTCTGACCGCTTCTCATATAAGACGACGTATTGTCACGTCATATTTACATTCGAAGCTTCTACTGAGATATTAAAATTAAGCTTTGAATGTTTGTCATCATATTTAATAAAGTCATCGCCATAAAAATATGATCTTTTTGGTAATGCAGCCTATAACTGTGAGGTTGGGCTACATTAGACCACACACATGGATGTCTGCGACTCTTTAATTTTTCATTGCGGCACTCTACATATGCTAAATGACACCTCTAAAATTACGTTTTTGCCATTTTGCCAATAGAAAGTTGTGGTATTTCATAATAGGAAGTTACTAGGCAACAGAGGCATGCATAAATAATATTTTAAGTCATGCAAATTTAAAGGAAAAGTTGCAGACACTGAACGACATGTGATTATAATGAAATAACAATGCTAGAAGGTAATATATACACATTTAGTAAAAGCCAGGCAAGTTATAGATATGCCTATTTTATTTCTACAAACTTAATAAAATTGCAAATATTAAAAGTTGTCAAAATAGCGCCTCAGTAGTTGTAGTGCTAAAATTAAAAACTATTTGATATTCTGTAATGATGGATTTTGACTATGTTAGTATTCACAGCAAGGCCAATAATTAACGAAATAGCTATAATGATGATAACATTATGAGCATCCACATCATAAACAATTGGAATCATAACAACCGCACCTAGTTCGCACTCAGAATTAAATGATCCATATCCATGTTCATATCAAATTGACGACAAACTTTTAGAATAAAAAGTAATGTCCATATCAATTGACGACAAACTTATAGAATAAAAATAATGCGTTTATAAATTAACGACAAGCTTTTAGAATTAAATACTGTCCATACCGATTGACGACAAACTTTTAGAATAAAAATAATAACCTTTTAAATTGATGACAAACTTAGAATAAAAATAATGCCCATATCAATTGACGACAAACTTTTAGAAAAATAATGTCCTTATAAAGACGACAAACTTTTACTATAAAATACTGTCCATATCGATTGACGAAAAACTTTTAGAATAAAAATAATGTCCTGATGAATTGACGACAAACTTAGAATAAAATAATGACTATATCGACTGACGATAAACTTTTAGAATAAAATAATCTCCATATCGAACTGACGACAAACTTTTAGATTAAAAATAATGTCCTTATAAATTGACTACAAACTTTTTAAATAAAAATAATGTCCATATCAATTGACGACAAACTTTTAGAATTAAAATAGTGTCCACATCAATTGTCGACAAACTTTTAGTATAATAATAATGTCTATATCAATTGACGACAAACTTTTTAAATAAAAATAATGTCCACATCAATAAACGACAAACTTTTACAATAAAAATAATGTCCATATTAATTGATGTCCATAACAACAGATGACAAACCTTAGACTAACAACTAGTGTCCTTGACAACAGACAATACATTTTTTACCAAAATTTTGTATTGAAAACAGCAAACAACGGACTTGAGAATAAAAAAATAATGTGACTAACATCCGACAGTGACACTGGAGCATTTTAAAGCAGCGATTCCTCAGTGGATCACTCGTATGTCAGCTTAATGACAGACCAGCTGTTCGACGAAACTTTGAAAAGCTCCATTGTCTATATCTGTGGTTACACTCAGTAAACAGTGGGGAGTTTGGTGAACTGTTGACCTTTACGGCCAATCACAGTCATTTCTGTTGAGTATGTGACCTCAAAAGTGCGCAAATGTTTGCTGGAAATGGACGTTTTTAAAATTTTACTATCGATTGGTACCGAATTCCAGTATGGTGACAACCCTAGTGTCTATACAAACATCATTTGTTGTACTCTCCTGTTCACTGAATGATGACGAAATTAACATCATGCACAAAAACATCTGCAGTTAAAACTGTGCATGCAGTAACTGAGCAATGTAAATGTCTGTGTGTGTGTCAG
Seq C2 exon
GCGGGTAAGTTGGATCCTCACCTGGTCCTGGATCAGCTGCGGTGTAACGGTGTGCTGGAGGGCATCCGCATCTGCCGACAGGGATTCCCCAACCGCATCGTCTTCCAGGAGTTCAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014:ENSDART00000137105:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]