GgaINT0105090 @ galGal3
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
NA
Coordinates
chr1:53802224-53802844:+
Coord C1 exon
chr1:53802224-53802385
Coord A exon
chr1:53802386-53802722
Coord C2 exon
chr1:53802723-53802844
Length
337 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AATGTTTTTTTCCGTACCAGGCT
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGCATGTCAGAAACAGCGTTGCCGGGAGCCTTTAAAACCAGGAAGGGTATGTTCCGAACAGTGGGACAACTTTACAAAGAACAGCTGGCTAAACTGATGGCCACCCTGAGGAACACCAACCCCAACTTCGTCCGTTGCATTATCCCCAACCATGAGAAAAAG
Seq A exon
GTAAAGGAGATTAGAACTACCGCCCATGCAGTCATAGATGGAGTTCTTTGGCAGAGTACGACTGGGTGTTATATCTTCCCAGTTTTTGCAACAGATCTCATAGCCATCCAGTTTAGTCAAGATCTCTCTTTGCAGTTATCTTAAATAATGGTACACTTTCCAGAATTTGGGAGACTGATCTTTGCAGTTATTTCTAAGGTGGCATAAAAGCTTTCAATTTCTTATAACCAGAAAAAACAGAGAACCGGCTGCTTTACAAAAAAGGGGAGGAGGCAAGGTGTAAAGCCTCTTTTGTACAAGCTTAATGATATTAAGCAAATGTTTTTTTCCGTACCAG
Seq C2 exon
GCTGGAAAGCTCGACCCCCACTTGGTCCTTGATCAACTTCGCTGCAATGGAGTGTTGGAGGGAATCCGTATTTGTCGTCAGGGTTTCCCCAACAGAGTTGTATTCCAGGAATTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(36.8=92.6)
A:
NA
C2:
PF0006316=Myosin_head=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTCAGAAACAGCGTTGC
R:
TCTGAATTCCTGGAATACAACTCTGT
Band lengths:
278-615
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]