MmuINT0103691 @ mm10
Intron Retention
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77781111-77781515:-
Coord C1 exon
chr15:77781322-77781515
Coord A exon
chr15:77781233-77781321
Coord C2 exon
chr15:77781111-77781232
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
CCATGTGCTTTCCTCTCCAGGCC
3' ss Score
11.49
Exon sequences
Seq C1 exon
TGGATCGGATCATTGGCTTGGACCAAGTGGCTGGAATGTCCGAGACAGCACTACCTGGTGCCTTCAAGACCCGGAAGGGCATGTTCCGTACTGTCGGACAGCTGTACAAGGAGCAGCTGGCCAAGCTCATGGCCACGTTGAGGAATACCAACCCCAACTTCGTGCGCTGCATCATTCCCAACCATGAGAAGAAG
Seq A exon
GTGCGGATGCTTGGCTGCACCCCTGGCAGCAGGGCTCCTTAGCTCCTGGGTACCACAGTGAGACTGTCTCCATGTGCTTTCCTCTCCAG
Seq C2 exon
GCCGGCAAACTGGACCCGCACTTGGTGCTGGACCAGCTGCGCTGCAATGGCGTCCTTGAGGGCATCCGGATCTGCCGCCAGGGCTTTCCCAACAGGGTGGTCTTCCAGGAGTTCCGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443:ENSMUST00000016771:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGGCCACGTTGAGGAAT
R:
GAACTCCTGGAAGACCACCCT
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types