HsaINT0107964 @ hg19
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36701976-36702653:-
Coord C1 exon
chr22:36702460-36702653
Coord A exon
chr22:36702098-36702459
Coord C2 exon
chr22:36701976-36702097
Length
362 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
GCATGTGTTTTCTTCTCCAGGCC
3' ss Score
10.96
Exon sequences
Seq C1 exon
TGGACCGCATCATCGGCCTGGACCAGGTGGCCGGCATGTCGGAGACCGCACTGCCCGGGGCCTTCAAGACGCGGAAGGGCATGTTCCGCACTGTGGGGCAGCTTTACAAGGAGCAGCTGGCCAAGCTGATGGCTACGCTGAGGAACACGAACCCCAACTTTGTCCGCTGCATCATCCCCAACCACGAGAAGAAG
Seq A exon
GTGCGGCTGCCTGGTGGGGTGGCCCGGGCAGGGCACTGTGGTGTGGGGTGCTCAGCCCTTGTCTGTCTCCCCAGCAAAAGCACCCCTCCAGCCCCCCAGCATGCACAGAGCCTTCAGTCGTTTCTCTGCAGGGTGGGCCTTGGCTCGCTTAGGAGATACGCTACATTCACAGCCTGCACTTCCTCTTGGTGGCATTGGCCCCTCCCAGACCTGGATCCTTTGACTTCATTGTCCAAACCTGTGGGCTGTAGCGACCCCCTCCCTTAGGCTCTTGCCCTGTCAGGTTCATAGGGGTTCCCTGACTATTCTCCGACTGTTCTAGGCACGGAAGTGAGACCGCATGCATGTGTTTTCTTCTCCAG
Seq C2 exon
GCCGGCAAGCTGGACCCGCATCTCGTGCTGGACCAGCTGCGCTGCAACGGTGTTCTCGAGGGCATCCGTATCTGCCGCCAGGGCTTCCCCAACAGGGTGGTCTTCCAGGAGTTTCGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-MYH9:NM_002473:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCATCGGCCTGGAC
R:
TCTGCCGAAACTCCTGGAAGA
Band lengths:
310-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)