HsaINT0107964 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36305930-36306607:-
Coord C1 exon
chr22:36306414-36306607
Coord A exon
chr22:36306052-36306413
Coord C2 exon
chr22:36305930-36306051
Length
362 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
GCATGTGTTTTCTTCTCCAGGCC
3' ss Score
10.96
Exon sequences
Seq C1 exon
TGGACCGCATCATCGGCCTGGACCAGGTGGCCGGCATGTCGGAGACCGCACTGCCCGGGGCCTTCAAGACGCGGAAGGGCATGTTCCGCACTGTGGGGCAGCTTTACAAGGAGCAGCTGGCCAAGCTGATGGCTACGCTGAGGAACACGAACCCCAACTTTGTCCGCTGCATCATCCCCAACCACGAGAAGAAG
Seq A exon
GTGCGGCTGCCTGGTGGGGTGGCCCGGGCAGGGCACTGTGGTGTGGGGTGCTCAGCCCTTGTCTGTCTCCCCAGCAAAAGCACCCCTCCAGCCCCCCAGCATGCACAGAGCCTTCAGTCGTTTCTCTGCAGGGTGGGCCTTGGCTCGCTTAGGAGATACGCTACATTCACAGCCTGCACTTCCTCTTGGTGGCATTGGCCCCTCCCAGACCTGGATCCTTTGACTTCATTGTCCAAACCTGTGGGCTGTAGCGACCCCCTCCCTTAGGCTCTTGCCCTGTCAGGTTCATAGGGGTTCCCTGACTATTCTCCGACTGTTCTAGGCACGGAAGTGAGACCGCATGCATGTGTTTTCTTCTCCAG
Seq C2 exon
GCCGGCAAGCTGGACCCGCATCTCGTGCTGGACCAGCTGCGCTGCAACGGTGTTCTCGAGGGCATCCGTATCTGCCGCCAGGGCTTCCCCAACAGGGTGGTCTTCCAGGAGTTTCGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCATCGGCCTGGAC
R:
TCTGCCGAAACTCCTGGAAGA
Band lengths:
310-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development