GgaINT0129369 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:388486-389023:-
Coord C1 exon
chr18:388827-389023
Coord A exon
chr18:388670-388826
Coord C2 exon
chr18:388486-388669
Length
157 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TTGTGCTTTATTCTTCCCAGGAA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCCAAGAATGCCCTAGCCCATGGTTTGCAGTCTGCTCGCCATGACTGTGATTTGCTCCGGGAACAATATGAGGAGGAGCAGGAAGCCAAGGGTGAGCTGCAGCGTGCCCTGTCCAAGGCCAACAGTGAAGTGGCCCAGTGGAGAACCAAATATGAGACGGATGCTATTCAGCGCACAGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTATGTGGAGAAAGTGGGGAAGGCTGGCAGAAACTAATAACAGGAATTGAGGAGAGCACCATAATTTACTGGCTGTAACATACTGGCTACACATCACAGCTTACCATGAACCTGGGAATTTGCTTTCTCACTGGGAATTGTGCTTTATTCTTCCCAG
Seq C2 exon
GAAGAAGCTGGCACAGCGCCTGCAAGATGCTGAGGAACACGTCGAAGCCGTGAACTCCAAATGTGCTTCCCTGGAAAAGACAAAGCAGAGGCTGCAGAATGAGGTGGAGGACCTGATGATTGACGTGGAGCGAGCAAATTCTGCCTGCGCAGCTCTGGACAAGAAGCAGAAGAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF135141=AAA_27=FE(8.7=100),PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(33.3=50.0),PF0003816=Filament=FE(22.1=100)
A:
NA
C2:
PF135141=AAA_27=FE(8.2=100),PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(20.7=100),PF045827=Reo_sigmaC=PU(35.4=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCCTAGCCCATGGTTTG
R:
TTTGGAGTTCACGGCTTCGAC
Band lengths:
252-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]