HsaINT0107782 @ hg19
Intron Retention
Gene
ENSG00000141048 | MYH4
Description
NA
Coordinates
chr17:10352181-10353966:-
Coord C1 exon
chr17:10353770-10353966
Coord A exon
chr17:10352365-10353769
Coord C2 exon
chr17:10352181-10352364
Length
1405 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
CATACTGACCCAATTTTCAGGAA
3' ss Score
8.04
Exon sequences
Seq C1 exon
GCCAAGAGCACTCTGGCCCATGCCCTGCAGTCAGCCCGCCATGACTGTGACCTGCTGCGGGAACAGTATGAGGAGGAGCAGGAAGCCAAGGCTGAGCTGCAGAGGGGAATGTCCAAGGCCAACAGTGAGGTTGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGCGCACAGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTATGTGCTTTTAGTGCAGGGGAGCAGGAAGAAATAAAAGTAAAGGCAGTGAAGGAAAAATAGAAGAAAGAGAATATTCCGGGCTTGGGGACACATGAAAGACTTCAGCTTATTTTATTATAGGTTGGTGGATTCCACCATATTCTTCTTCTTAAAGCCCAGTGTATGTCCACTGGAGAATGGAATGAGACCAGATCCCTCCACCCATTCTTGTCCAGAAGCATCTTAAATTTCTTTCCACCAAGATGGATTATTAATTATCAGAATATTATTTATGAATTAAATAGAATTAGTATCTTTTAATAGAAGGAAAAATTGAGACATTGAGACTCTCTGGTAAATTATTATGAGTATTACAATTAACAATAATCAGTTTTTCCTCAGATGGAGTATTGAATGTTTATATTAAGGTTGTCATATGCTGTCATTATTTCAACTAACAACCTATATCAATGGATGTATTCACTAATTACACGTACTGTTTGCGGACTACAAGTCATGAGATTTACAGATTTACACATAGAAGGAAAAAAAGCATTATACTCCTAGTGAAAGAAGCCTTTCTAAATTTAATTTATCTCAGTAGTTGTTAGAATTAAACAGGATGAAAGAGTTTGTAGCAAGCATTTCCAGAGAGAGTTCTAGATAAGAGTGTGGGCTGGGAAAGGTCATGAATTACATAGGTTGGTGAAGAGTAGTAGACAAGATTTTAGAGGAAATTTGGGAAATGCAATAATGCAGTAATATTTATTATCAAAGGCCACCAAATCCAGAAAGTTACTGATTCATTGTATGACCTTGAACATATCACTCTGGGCCGCAGTTTCCTCATTTGCAAAATAAACAGAACCATACTAGAAAATGCTTAAAGATACTACTCAATGCTACCATTCCTTGGTGATATGCTTCCTGTTCATGGTTGCCATTTCTTCCTCAAAGTAAATAAAACTCAGCCCTTTTCCACAAGTAGTTACAGATCTCTAAATCCCAGGTTTCAAAAGAGAAATGTACTGTCTCTTCCTGTTTTCTACTTCTCACCCCAGGCAAAGTTCAAGAAAATGTGCCACACTATAGAGGGCCAGCTTAGTGAAATAAAAACAAAGAAAGAGGAGCAAATTTTCACATTGCTCACTCAGCTCTAGTGCTAACTTATATTCTCTTTCTCTCATACACACACATACACACACACAGGTGCTTCGTAAATATGTTTGGCAATACCTGAGATGGATAAAAATAAGAACTCAACAGGGAAAACAGAATTCTAAGAGAGTGAAAATGTTTAGAAAAATTCAACAACTTGTAGACAACTCTTGGGGAAATATGCTTTCCTAGTCAGCAGCTTTATAAAGGGCACTGTGGTGACTCTGAGTCTGCTCTTGGTCACTCATACTGACCCAATTTTCAG
Seq C2 exon
GAAGAAGCTAGCCCAGCGTCTGCAGGATGCAGAAGAACATGTAGAAGCTGTGAATTCCAAATGTGCTTCTCTTGAAAAGACAAAGCAGAGGCTACAGAATGAAGTAGAGGACCTCATGATTGATGTGGAACGATCTAATGCTGCCTGCATAGCTCTCGATAAGAAGCAAAGAAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141048-MYH4:NM_017533:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=NA C2=0.290
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGCACTCTGGCCCATG
R:
CAGGCAGCATTAGATCGTTCCA
Band lengths:
342-1747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)