GgaINT0129371 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:387947-388407:-
Coord C1 exon
chr18:388242-388407
Coord A exon
chr18:388072-388241
Coord C2 exon
chr18:387947-388071
Length
170 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
ACATTATTTTCCTTACACAGAGG
3' ss Score
7.93
Exon sequences
Seq C1 exon
ATCCTGTCGGAGTGGAAGCAGAAGTACGAGGAAACGCAGGCTGAGCTGGAGGCCTCCCAGAAGGAGTCTCGCTCCCTCAGCACAGAGCTGTTTAAGATGAAGAATGCCTATGAGGAATCCCTGGACCACCTGGAAACACTGAAGCGTGAGAACAAGAACTTGCAGC
Seq A exon
GTAAGTCCACGGTCCTCTGCTCATAGCAGGGCTTTTTCTCAACTGTGTGTGTCCACCTCTGCACGTCTGTTTGCCAGAAGACATCTTTGCCTTAATGTGTCACGGCAACTCTTTTTTTTTTTTTTTTTTTTTTTTGTCTGGTGTATTACAACATTATTTTCCTTACACAG
Seq C2 exon
AGGAGATTTCTGACCTCACGGAGCAGATTGCAGAGGGAGGAAAGGCTATTCATGAGCTGGAGAAAGTCAAGAAGCAGATTGAGCAGGAGAAATCTGAACTTCAAGCCTCCCTAGAGGAAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=NA C2=0.476
Domain overlap (PFAM):
C1:
PF135141=AAA_27=FE(7.4=100),PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(18.7=100),PF045827=Reo_sigmaC=FE(37.4=100)
A:
NA
C2:
PF135141=AAA_27=FE(5.5=100),PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.9=100),PF045827=Reo_sigmaC=PD(25.9=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGTGGAAGCAGAAGTACG
R:
CCTGCTCAATCTGCTTCTTGACT
Band lengths:
246-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]