GgaINT0129373 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:387116-387769:-
Coord C1 exon
chr18:387461-387769
Coord A exon
chr18:387320-387460
Coord C2 exon
chr18:387116-387319
Length
141 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGTCTCATCTCTCACACCAGGAT
3' ss Score
8.71
Exon sequences
Seq C1 exon
GCCTCCCTGGAACATGAAGAAGGGAAGATCCTGCGCCTTCAACTGGAGCTCAACCAGGTCAAGTCTGAGATTGACAGGAAGATAGCAGAGAAAGATGAGGAAATTGACCAGCTGAAGAGAAACCATCTCAGAATTGTGGAGTCCATGCAGAGCACTCTGGATGCTGAGGTCAGGAGCAGGAATGAGGCCCTGAGGCTGAAGAAGAAGATGGAGGGAGACCTGAATGAAATGGAGATCCAGCTCAACCATGCCAACCGCATGGCTGCAGAGGCACAAAGGAACCTGAGAAACACACAAGGAGTGCTCAAG
Seq A exon
GTATGTCAAAACTAAAGACATACTCATTGATTTCTCAAAAAATAAAAATGTTTCTGTGATTCAACTCTATAAGTTCTACCCTAATGTGAAAACAGCAAAACAGGAAAAATATGCCTCACAATGTCTCATCTCTCACACCAG
Seq C2 exon
GATACCCAGATACACTTGGACGATGCTCTCAGGTCACAGGAAGACCTGAAGGAGCAGGTGGCCATGGTGGAGCGCAGAGCAAACCTGTTGCAGGCTGAAACTGAAGAGCTACGGGCAGCGCTGGAGCAGACAGAGCGCTCGAGGAAAGTGGCTGAGCAGGAGCTTCTGGATGCAAGTGAACGTGTGCAGCTCCTCCATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.706
Domain overlap (PFAM):
C1:
PF135141=AAA_27=PD(5.1=36.9),PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(10.9=31.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCAGGAGCAGGAATGAGG
R:
AGCTCTTCAGTTTCAGCCTGC
Band lengths:
253-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]