BtaINT0097297 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30084058-30085208:-
Coord C1 exon
chr19:30084900-30085208
Coord A exon
chr19:30084262-30084899
Coord C2 exon
chr19:30084058-30084261
Length
638 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
CCTTTGCTCCATCTGCACAGGAC
3' ss Score
8.28
Exon sequences
Seq C1 exon
GCATCTCTCGAGCATGAAGAAGGCAAAATCCTTCGCATCCAACTTGAGTTAAATCAGGTGAAATCAGAGATCGACCGGAAAATCGCTGAAAAAGATGAAGAAATTGATCAGCTAAAGAGGAACCATCTCAGAGTTGTGGAGTCAATGCAGAGCACCCTAGATGCTGAGATCAGGAGCAGGAATGATGCCCTGAGGATCAAGAAGAAGATGGAGGGAGACCTCAATGAAATGGAAATCCAGCTGAACCATGCCAACCGCCAAGCTACTGAGGCAATAAAGAATCTTAGAAACACACAAGGAGTACTGAAG
Seq A exon
GTACATTGGGATAAACAAACGTGGTGTTATACACTCTGGGAGTAATTGTGTGACTCAAATTTTAATATTTCAGGAGGACTATATGCCATAAGTCATCTGAATAGTAAAGTAATTCATTGAAGTTTTGCTGCACACAGTCGAATAACAGCTTAATTCTTAAAAGCCCAGGGCAGAATTTACTTTGTCATCTGAAAAGAAGACAAAGTGATGAGCGGTGACAAGACAGAGGTAGTGATAAATGATTTTAGCTACATACCACTGCACAAATCACTTCACTTACGTGGACTGCATGTGTTTAATGTATAAATAGAAACATAATATGTATATCTCTATTTATTTAACATTGATAAAATAAGACCATTTTATTAGCTCATCTCTAAGGATACTTTCCTAATGCAAAATTGTATAGCTTTATTCATGGCATTGTCTTTAATGACTCAGGATCTAAAATAATATAACATCACGTTCTTGGGTAGAACTGCCACCCAAGCTACAAAGAATTTGTCTTTAAAGAGACTTAAGGATTTTTCCTGTCCAATCACGCACTCAGTTGTCAAGATCAACGTGTGTACGTAACCCTAAAGTTGCATTTGCTTTAACTGGAGCGTGTGTAAGAGCCCTTTGCTCCATCTGCACAG
Seq C2 exon
GACACTCAGCTCCACTTGGATGATGCCATCAGGGGCCAGGATGACCTTAAGGAGCAGCTGGCCATGGTTGAGCGCAGAGCCAACCTGATGCAAGCTGAGATTGAAGAGCTGAGGGCATCGCTGGAACAGACAGAGAGGAGCAGGCGAGTGGCAGAGCAAGAGCTTTTGGACGCCAGTGAGCGTGTGCAGCTTCTGCACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=NA C2=0.574
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.8=34.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGTCAATGCAGAGCAC
R:
ACTGGCGTCCAAAAGCTCTTG
Band lengths:
352-990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development