GgaINT0129377 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:385391-385844:-
Coord C1 exon
chr18:385740-385844
Coord A exon
chr18:385487-385739
Coord C2 exon
chr18:385391-385486
Length
253 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTATTTACCTTTTTCTGTAGTCT
3' ss Score
7.61
Exon sequences
Seq C1 exon
GTGCGGGAGCTGGAAGGGGAGGTTGATGCTGAGCAGAAGCGCAGCGCTGAAGCCGTGAAGGGTGTACGCAAGTACGAGAGGAGGGTGAAGGAGCTGACCTACCAG
Seq A exon
GTAAGGCAGAAAAAGCTTTTTCTTGCACATCCTTCTCTCACGAAGTCAGAGTATTGTCATACTGACACTGCGATTTCTTTGATACTGTGATTTCTTCCCACTGTTCTCTTTCACTGACATTGTTAACATGTCTATTTCTTTTGTCCTACTGGACAGCAGTGCTCTCTGAGGAGTGTTACTGCCTTTGTTTCAGCTAGAGGAAATGTAAGGGGGGAGGATAGGAAGTGTTACTATTATTTACCTTTTTCTGTAG
Seq C2 exon
TCTGAAGAAGACCGGAAGAATGTTCTCAGGCTCCAGGACCTGGTGGACAAGCTGCAGATGAAGGTGAAATCCTACAAGAGGCAAGCTGAGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCTGGAAGGGGAG
R:
CCTCCTCAGCTTGCCTCTTGT
Band lengths:
196-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]