BtaINT0097300 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30082041-30082345:-
Coord C1 exon
chr19:30082241-30082345
Coord A exon
chr19:30082137-30082240
Coord C2 exon
chr19:30082041-30082136
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACG
5' ss Score
7.66
3' ss Seq
TGCTACCTCTTTCATCGCAGACT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAGGGAGCTCGAAAATGAGGTTGAAAATGAACAGAAGCGCAATGCTGAGGCTGTCAAAGGTCTTCGGAAACATGAGAGAAGAGTGAAGGAACTCACTTACCAG
Seq A exon
GTGACGAGCTTTTCCATGTAATTCAGGCCTACTGCTTTCAAGAAAATAAAAATAAATTGTTTTCAAATTATGACACTATCTATTTGCTACCTCTTTCATCGCAG
Seq C2 exon
ACTGAGGAGGACCGCAAGAATGTTCTCAGGCTGCAGGACTTGGTGGACAAGTTACAAAGCAAAGTCAAGGCCTACAAGAGACAAGCTGAAGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGGAGCTCGAAAATGAGG
R:
TCAGCTTGTCTCTTGTAGGCCT
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development