HsaINT1024124 @ hg38
Intron Retention
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10444604-10444899:-
Coord C1 exon
chr17:10444795-10444899
Coord A exon
chr17:10444700-10444794
Coord C2 exon
chr17:10444604-10444699
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TCTACTTGCACCTCTTTCAGACT
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTGAGAGAGCTTGAAAGTGAGGTGGAAAGTGAACAGAAGCACAATGTTGAGGCTGTCAAGGGTCTTCGCAAACATGAGAGAAGAGTGAAGGAACTCACTTACCAG
Seq A exon
GTGACCAGTGTTTTCATATCTTCCAGGCCTATAGTTTTCAAGAAAATCATGAGTTGTTTTAAAATAATGGCACCATCTACTTGCACCTCTTTCAG
Seq C2 exon
ACTGAGGAGGACCGCAAGAATATTCTCAGGCTGCAGGACTTGGTGGACAAATTGCAAACCAAAGTCAAAGCTTACAAGAGACAAGCTGAAGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424:ENST00000255381:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGCACAATGTTGAGGCT
R:
GCCTCTTCAGCTTGTCTCTTGT
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains