MmuINT0103521 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67072585-67072887:+
Coord C1 exon
chr11:67072585-67072689
Coord A exon
chr11:67072690-67072791
Coord C2 exon
chr11:67072792-67072887
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
CTTCTTGCTGCATCTTTCAGACC
3' ss Score
8.64
Exon sequences
Seq C1 exon
GTGAGGGAGCTTGAAAACGAGGTGGAAAATGAACAGAAGCGCAACATCGAAGCCGTCAAGGGTCTTCGTAAGCACGAGCGCAGAGTGAAGGAACTCACCTACCAG
Seq A exon
GTGACTGACCTTTTCTTCTCTGCCAGGCTTACAGAGTTTGAGAAAGTAAAACTAGCAGGGCAGTCCCCGCTAATGATGTCATCTTCTTGCTGCATCTTTCAG
Seq C2 exon
ACCGAGGAGGACCGCAAGAACGTGCTGAGGCTGCAGGACTTGGTGGACAAACTACAGACTAAAGTGAAAGCCTACAAGAGACAGGCTGAGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGCTTGAAAACGAGGTG
R:
CCTCCTCAGCCTGTCTCTTGT
Band lengths:
196-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: