GgaINT0129713 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:2128527-2129191:+
Coord C1 exon
chr18:2128527-2128622
Coord A exon
chr18:2128623-2128914
Coord C2 exon
chr18:2128915-2129191
Length
292 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GGCTTTCTCCTGCTTTCCAGGTG
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTGTGTGGGGCATTCCTCTCCTCTGACTGGAGTGAAAGGAAGAAGAACGGGCTGACATCGGGCTTTTTTGGGACAGGGGAATGCTTTGTGTTCACT
Seq A exon
GTAAGTCAAATTTATGCTTATGGGCTTGTCTTGTCTTTCGTTGCTACTTTATTCCTATAACTCTAGGCACGGCAGCACACCATTCTTTAGGATGTTCTGTTGGGCCAGAAAAGAATGGAAAACTATCTCCCAGAGCAACCTAAAGGGATGACACCAGGACAGTGTGTGCTGCAGGGAGGGATCCTGAGCTGTCCCTTCCCTGCTGCAGGTCTGGCTCGCACCGTGTGGTCCCCAGGCAGCCATGCAGCGATGCCCCAAGGACAGGGCTCACTGGCTTTCTCCTGCTTTCCAG
Seq C2 exon
GTGCGCCCTGAGATGGAGAGGTACGAGTGGGTGTTCATCAAGAAGCCAGAGCTGGCCAAAGCCATGCCACGCTCGCGCCAGCGGTCACCATCACCCATTCCCACAGCCCCGCTCAGCTCCTCCCCGCACAGCCGCAGTGCCAGCCCCAACCTCCTCACCGTGCCCGCGCCGCAGCGGAAGGGCCGCCTGTCCCCGTTCCTGGCCATCAGGCATTTCCTCCTGCCTTCCAAAACAGCCTCCATGTTCATGTCTGGCTCTCGGGAAGGGATCGTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001244:ENSGALT00000039321:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(33.0=100)
A:
NA
C2:
PF0753411=TLD=PD(21.8=20.4),PF0753411=TLD=PU(39.5=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGACAGGGGAATGCTTTG
R:
TTCCCGAGAGCCAGACATGAA
Band lengths:
293-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]