GgaINT0129719 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7952348-7953169:-
Coord C1 exon
chr18:7953050-7953169
Coord A exon
chr18:7952508-7953049
Coord C2 exon
chr18:7952348-7952507
Length
542 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TGGTGTTTGTCATGATGAAGGTG
3' ss Score
2.95
Exon sequences
Seq C1 exon
ATCTGCTTGGCCACCTTGACAGCGGCCTCGTGCTGGGGGTTGTTCACTACGAGGTCAGCAGGACAACCCTGGCAGATGCTCTCCTACAGCTGGAAGGCAGGGAAGCTATTGATCATAAAG
Seq A exon
GTAAAGCACTGGTTCCTCTCTGCAAGATTAAGGGTTTGTATTTTGTTTTCAGTTAAAAAAAAAAATATGCGTAAGTTTCTGTTGAAAGTGATGTTTCATCGTTCTTGGCAGGCCAAGAGGTGCAGTTGTATAAGAGCTCAGATTTTCTTTGATAACATCTAACTTCCCAGAGAAGTCTGAATGATTCAGACTCAATTCGCCACAGGCTTCTAAACACAAGAACTGACGAGCAATGTTGTAAAGGCTTTGCAGGAAATATCCTCCCTAGAACAGGAGGTGAGAAGAGATAATCTAGTCAAAGGCAATTCCCAAGGCCAGGGAAGATATTGTACCTGTAGTCATACAAGCTCAGGTTCAGCCACTCTCAATTCACCAACGTAAACTAATTCTGATTACACAATGGCCATTTTCTCTGCTGTTGCATCTTCTATGACTAAAATAGAAACACTCTTATTCAGAACAGAAAACCCTTGTTTATTGCATGTGCTTAAAACATGTGCTTTGAAAGCTCATTGCGGACAATGGTGTTTGTCATGATGAAG
Seq C2 exon
GTGCAGAAAACCTGAAGGAGAGTGACCAGAGCTTCCTGGGCTTTTCTGAACCAGCACACATAGCAGCAAGCGGCATGGAGCTCTGGAGGCAGCAGGTCCTCGCCGTGGCCAGAGTTCGTTTCTACAGACTGAGGCATGATGGAAAGCTTCTCCGGTCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021393:ENSGALT00000006911:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTTGGCCACCTTGACA
R:
GGACCGGAGAAGCTTTCCATC
Band lengths:
278-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]