GgaINT0129721 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8215851-8216555:-
Coord C1 exon
chr18:8216386-8216555
Coord A exon
chr18:8215979-8216385
Coord C2 exon
chr18:8215851-8215978
Length
407 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
TGTTCTTGATGTTAATTCAGGAT
3' ss Score
5.3
Exon sequences
Seq C1 exon
ATTGCTGTTCTTTGGAGTATTTATCATCCAGATGCTCATGGTTTTCTTTGGTTTTGAACTATGGAACAAATCCATCTCAGAACTGACAGCCAGCAAGTATTTTCTTCCTGCTCAGCCTCCCACTCAAACCCAAAGCAAGTCAACAAATCTTCTCATCTTCAATGACACAG
Seq A exon
GTGAAGAACATGCGAGTTGATTGGCATCCTGCATCACTGAATGCTCTTGGAGCTGATAGGGCAACTTTGCTTTCTGTTTTCTCCTTTATACATCAGTGGCTTTGAGGGGTGTTTTGTTTTGAGAGGAAACAAATTCAGTTTTAGTGGTGATTAACGAGCAGCTGATACGTAAAAGAACAATGGATCAGCTAATTTTTTTTTTTAAAGACAATACATGAACTATGGAAATGTGCTGTCTTTAACAAGTTTAGTTCAAATAGGGAAGAAAATCAGAAGAAATAGAAATTGATTCAGATTCTAAATGAGTATTTTAGCATTGCACTCTTTTGAAAGCAGGAGTTTGTCCACAAAAAAAACTGATTGTATTAAAAACCTAATTCTAATTTGTGTTCTTGATGTTAATTCAG
Seq C2 exon
GATCAGAGATAGAGGATTTCATTGCTGCTTTGAAGATTCAAAATATTATGCCAGAAATAACTCTTGAGAAAAACATCACAAGCCTGCCGCGACATAATGGAGCTATAAAGATATCCCTGGAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCTTTGGAGTATTTATCATCC
R:
CTTGCCTTCCAGGGATATCTT
Band lengths:
295-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]