GgaINT0129968 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4172367-4172776:-
Coord C1 exon
chr19:4172647-4172776
Coord A exon
chr19:4172449-4172646
Coord C2 exon
chr19:4172367-4172448
Length
198 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACG
5' ss Score
7.66
3' ss Seq
TTTCACCCTCTCCTCCACAGGGA
3' ss Score
11.8
Exon sequences
Seq C1 exon
GTTACAGCGGCTGGGTGAGCCTCAGCGAGGTGGACCCCGATGAGGAGGTGCAGGGGGAAATCCACCTCCGCGTGGAGCTCCTGGAGGGCGAGGGCGGCCAGCGGCTGCGGTGCACTGTGCTGGAGGCCAG
Seq A exon
GTGACGTTGGGGATGGGGATGTCCCACTCCTGGGGTGACAGCTTTGGTGGTGTCTGCTGAGTCCTGGCTGCTCCGTGACTCAGTTTCCCCATTGCACCTGAGACAGCGGGGAGCCAAGGAGGGGAGACAGGGAGCGCTGGGTGCCCACTGGGATGGGATTCTGGAGGCTCACAGGGAATTTCACCCTCTCCTCCACAG
Seq C2 exon
GGATTTGGCCAAGAAGGACCGGAACGGTGCATCCGACCCCTTTGTCTGTGTGAGCTACAATGGCAAAACGCAGGAGAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.8=18.2)
A:
NA
C2:
PF0016825=C2=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCGAGGTGGACCCC
R:
TCTCCTGCGTTTTGCCATTGT
Band lengths:
187-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]