DreINT0124787 @ danRer10
Intron Retention
Gene
ENSDARG00000029372 | rasa4
Description
RAS p21 protein activator 4 [Source:ZFIN;Acc:ZDB-GENE-060526-349]
Coordinates
chr5:58656558-58658823:+
Coord C1 exon
chr5:58656558-58656690
Coord A exon
chr5:58656691-58658741
Coord C2 exon
chr5:58658742-58658823
Length
2051 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACTTTCGGCTTTATTTCTAGAGA
3' ss Score
7.99
Exon sequences
Seq C1 exon
GTGTTGACGGATGGATGAACCTAACAGAGATTGACCCAGATGAGGAGGTGCAAGGGGAGATTCACCTCCAGATCTCAGTGCTGGGAGATGGAGATATCCCACGGAAACTGTGCTGCCAGGTCCTAGAGGCAAG
Seq A exon
GTGAGGAGTTGGATTAGCTATATATACTGTATAAACAAGTTAGGTTTCAGATTTCAGGTCATTAAATAAACAAGTAAATAAGTAAAAACGCACATAAATCACAAAAATACAAAGATTTGGTTGGATTGCAGCACCAAATTTTTCTGCTTAATGAAATTCATTCATTCATTCGTTTTCTTTTCAGCTTAGTCCCTTTATTAATTCAGGTTTGCCACAGCGGAATGAACCACCAACTTATCCAGCACTAAGTGTTTTACAGCTAAATTATTAAATGAGGGCTAAAAGACAAACAAAGCACCTTTAACGCTGAAAAAAAAATTATTAATTACTGATTTTTTTAAGGTAAGTGGTTGAAAACAATTTATATTGGCTGAATTTGAACAAAGTATGATCAAAGTTGAACATTACTAAATTTGTTCAAATTCACTTACATAAAAAAGTAAATCCAGTTTTTTTTCAGTGCAGTTAAAAGTAATAAATAGTTATTAAAAATAAAAACAATATAGACATGGGCAAGTTTAAACAGGTCAGTTTTCAGCTGCTTCTTGAAAGTGTCTACAGAGCATTCCACTATTTGGGAGCAATTACCTTAAAAACACAGCCTCCTTTTGTCTTCCATCTAGAATGAGGAACAACTAACAGGAACTGGTTTGAGGATCTCAGATTCCTACTTGAGTTGTAAGGTTTCAACGTCTCTTTTTAAGGTCATGCGGTGAACAAAAAACATTTTGAGAATTCTAAAAAGAATTCTCGATTTGACAGGGAGGCAGTTTTGAGAGATAAGTTATAGAGAAAAAAAAGTGTTGCAAACTTTGAAAGATGCCTTCAACATAGATCTGGATACAAATCCACTTATGGCCATTTTTGGGCTGTCAGTAGATGCTAACTATTTAGTATTGTTCTGAAAGGCTTTAGCTTTTACTACTTTACTAGAAAGACGTCTCATCCTATATATTACATTTTTTGTTATATAAAACAAACCTGGGAAAATCACAGATTTATTCCAAACTTTCTTCTGTCAGCAGGCAGCACAATGATTGTGACTCAATGTTAGCATGTAAATGTCTTCAGGAGAGGAATCTCGTCACACCTGTAAATTTTCAGGCATATCGAGCATTGTGTGGCTGAGTTATAAGTACTTCCTTTTCCATGAAAAAACACTGATCTGTCAGTCTGCCACAGACTTCATCGAAAACTAAAGCCTGCAGGGACACCGGCCCTTCAGGACCGAGATTGGTGACCCCTGGTCTAGGAGAAGCTTGTTAAACTGTAAAATTTGTCATTTCCTGTTGCCAACAGGTGGCGCTATGTCTGTAACTAGATGTTGGCATGTAAACATGCTCATGTCAGGACTCCTATCAAACATGTGTCATTTAAGGCAGACAACACATGTCTGAGTTATAACAACTTCCTGTTTCATGGCGTAACATCAAAGTTTGTGACACACCCTTCGACGAAAGCTCTAGATCTTCGCAATTTAACATCAATTTAACATTCGCAATTTGTTATCTAAAAGCCTTTAGATAACAATAACAATTTTGGTGTTGATCTGATAAAATCTCTAAGAGGAGTTTGTTACAGTACAATGCCTGGAAATGGCAAAATCTGCACTTTTTTGGCAGAGGAAATCAGAAAGTATCCGACTTCCTGTTGATGATGACTGATGGTGATGACAGACAGTACATATTATTTGACTAGATAATTTTCAAGACACTATTATTAGTAATCAACTTAAAGAATTTCTACAGAGGAAAAAATATTATAGTAGATACTGTGAAAATATTCCTTTATCTATTGAACATAATTTGTGAAATATTTGAAAAAGAAGAAGGAGGCCTAATTATTTTTATTTCATCTGCAGTCACGATTAGTGTTGTGTGTTATTCAAACATAAAGAAACAGATATAACCAGCCATGCACAAAAATAAAATGTCCTCAGTGTATGTGAATCAGGCATGGACTGCTGAAATGGGGATTGGGAGATTTCATCTTCATAAGCTGTGTTTGGATTTGTGTTTAATAGCTTCATGTACTTTCGGCTTTATTTCTAG
Seq C2 exon
AGATCTTGCGAAAAAGGATCGCAACGGGGCCTCTGATCCTTTTGTCCGAGTGAGATACAATGGGAAAACGTATGAGAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029372:ENSDART00000097374:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.6=17.8)
A:
NA
C2:
PF0016825=C2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]